Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QLQ22_RS21295 Genome accession   NZ_CP126116
Coordinates   4282003..4282644 (-) Length   213 a.a.
NCBI ID   WP_223437880.1    Uniprot ID   -
Organism   Metabacillus sp. CT-WN-B3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 4277003..4287644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ22_RS21275 (QLQ22_21275) - 4278849..4279409 (-) 561 WP_284015509.1 GNAT family protein -
  QLQ22_RS21280 (QLQ22_21280) - 4279468..4279866 (-) 399 WP_284015510.1 hotdog fold thioesterase -
  QLQ22_RS21285 (QLQ22_21285) - 4279880..4280938 (-) 1059 WP_284015511.1 PQQ-dependent sugar dehydrogenase -
  QLQ22_RS21290 (QLQ22_21290) - 4281229..4281915 (-) 687 WP_284015513.1 SIMPL domain-containing protein -
  QLQ22_RS21295 (QLQ22_21295) comA 4282003..4282644 (-) 642 WP_223437880.1 response regulator transcription factor Regulator
  QLQ22_RS21300 (QLQ22_21300) - 4282725..4285037 (-) 2313 WP_284015514.1 sensor histidine kinase -
  QLQ22_RS21305 (QLQ22_21305) comX 4285067..4285228 (-) 162 WP_223437884.1 competence pheromone ComX -
  QLQ22_RS21310 (QLQ22_21310) - 4285233..4286144 (-) 912 WP_223437886.1 polyprenyl synthetase family protein -
  QLQ22_RS21315 (QLQ22_21315) degQ 4286317..4286457 (-) 141 WP_101567816.1 degradation enzyme regulation protein DegQ Regulator
  QLQ22_RS21320 (QLQ22_21320) - 4286699..4286926 (-) 228 WP_223437888.1 hypothetical protein -
  QLQ22_RS21325 (QLQ22_21325) - 4287175..4287465 (+) 291 WP_223437890.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23957.38 Da        Isoelectric Point: 4.8942

>NTDB_id=836714 QLQ22_RS21295 WP_223437880.1 4282003..4282644(-) (comA) [Metabacillus sp. CT-WN-B3]
MIHILVVDDHPAVREGTKAILETEPDVRVSCLNPPYSIDVIKHISFHEYDVVLMDMNLGDINGMELSTEIIKHSEDCKII
LYTGYDVEDYFEEAIRLGIHGAISKTETKEKILSSIRHVLSGDIVVPYTYLKSLILQQKMKSSSGSNDIEALNDREKAIL
QEVERGLTNQEIADKLHLSKRSIEYSLTSIFNKLNVGSRTEAVLISKSEGIID

Nucleotide


Download         Length: 642 bp        

>NTDB_id=836714 QLQ22_RS21295 WP_223437880.1 4282003..4282644(-) (comA) [Metabacillus sp. CT-WN-B3]
ATGATACATATTTTAGTTGTGGATGATCATCCAGCAGTACGTGAGGGAACAAAAGCGATATTGGAAACAGAGCCGGATGT
TAGGGTATCCTGCTTAAATCCCCCTTATTCAATTGATGTTATTAAGCATATCAGCTTTCATGAATACGATGTTGTCCTGA
TGGATATGAATCTCGGAGATATTAATGGAATGGAGCTTTCCACAGAAATTATTAAGCACTCCGAGGATTGCAAGATTATT
CTGTATACAGGCTACGATGTAGAAGATTATTTTGAAGAGGCAATTCGCCTTGGGATTCACGGGGCGATCAGCAAAACAGA
GACAAAGGAAAAGATTCTTTCTTCCATTCGGCATGTTCTCTCAGGTGACATTGTTGTGCCGTATACCTACTTAAAATCTC
TCATTCTTCAGCAAAAAATGAAAAGCAGTTCCGGTTCAAATGATATAGAAGCATTGAATGATCGTGAGAAAGCCATACTG
CAAGAGGTTGAAAGAGGTCTGACGAACCAGGAGATTGCCGATAAGCTTCATTTAAGCAAGCGGTCAATTGAATACAGTTT
AACCTCTATTTTTAATAAATTAAATGTCGGTTCAAGAACAGAAGCTGTGTTAATTTCAAAGTCAGAAGGAATTATTGATT
AG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

64.019

100

0.643