Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   U7118_RS04545 Genome accession   NZ_CP141283
Coordinates   867278..867913 (+) Length   211 a.a.
NCBI ID   WP_014480830.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 862278..872913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS04520 (U7118_04520) liaI 863405..863785 (+) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -
  U7118_RS04525 (U7118_04525) liaH 863812..864489 (+) 678 WP_015714684.1 stress responsive protein LiaH -
  U7118_RS04530 (U7118_04530) liaG 864590..865462 (+) 873 WP_014480833.1 DUF4097 domain-containing protein -
  U7118_RS04535 (U7118_04535) liaF 865496..866221 (+) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  U7118_RS04540 (U7118_04540) liaS 866218..867300 (+) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  U7118_RS04545 (U7118_04545) vraR 867278..867913 (+) 636 WP_014480830.1 two-component system response regulator LiaR Regulator
  U7118_RS04550 (U7118_04550) gerAC 867921..869036 (-) 1116 WP_088272470.1 spore germination receptor protein GerAC -
  U7118_RS04555 (U7118_04555) gerAB 869033..870130 (-) 1098 WP_041333097.1 spore germination receptor protein GerAB -
  U7118_RS04560 (U7118_04560) gerAA 870099..871547 (-) 1449 WP_041351713.1 spore germination receptor protein GerAA -
  U7118_RS04565 (U7118_04565) yvzF 871666..871851 (+) 186 WP_041351712.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23197.79 Da        Isoelectric Point: 4.9049

>NTDB_id=836683 U7118_RS04545 WP_014480830.1 867278..867913(+) (vraR) [Bacillus subtilis strain DKU_09]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENELPHESLTKRELEILFL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=836683 U7118_RS04545 WP_014480830.1 867278..867913(+) (vraR) [Bacillus subtilis strain DKU_09]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGAGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTTCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

37.668

100

0.398