Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   U5072_RS12990 Genome accession   NZ_CP141222
Coordinates   3079764..3080378 (+) Length   204 a.a.
NCBI ID   WP_031130883.1    Uniprot ID   -
Organism   Streptomyces sp. SS162     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3074764..3085378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5072_RS12965 (U5072_12965) - 3074817..3075392 (+) 576 WP_031128851.1 TerD family protein -
  U5072_RS12970 (U5072_12970) - 3075586..3076098 (+) 513 WP_031128852.1 GNAT family N-acetyltransferase -
  U5072_RS12975 (U5072_12975) - 3076117..3077508 (-) 1392 WP_331452810.1 M1 family metallopeptidase -
  U5072_RS12980 (U5072_12980) - 3077578..3078156 (-) 579 WP_249466788.1 heme-binding protein -
  U5072_RS12985 (U5072_12985) - 3078521..3079681 (+) 1161 WP_051839322.1 sensor histidine kinase -
  U5072_RS12990 (U5072_12990) vraR 3079764..3080378 (+) 615 WP_031130883.1 response regulator transcription factor Regulator
  U5072_RS12995 (U5072_12995) - 3080517..3081017 (+) 501 WP_031130885.1 hypothetical protein -
  U5072_RS13000 (U5072_13000) - 3081137..3082135 (+) 999 WP_331452811.1 zinc-binding dehydrogenase -
  U5072_RS13005 (U5072_13005) - 3082153..3082626 (-) 474 WP_031130889.1 GNAT family N-acetyltransferase -
  U5072_RS13015 (U5072_13015) ugpC 3083066..3084199 (+) 1134 WP_031130891.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  U5072_RS13020 (U5072_13020) - 3084421..3084849 (+) 429 WP_031130893.1 hypothetical protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21456.74 Da        Isoelectric Point: 8.0317

>NTDB_id=836550 U5072_RS12990 WP_031130883.1 3079764..3080378(+) (vraR) [Streptomyces sp. SS162]
MRVLLCDDHAVVRAGLLALLGSEPGIEVAGEAGSGEEAVARAARLRPDVVLMDLQLGPGMDGVEATRRIASPEVRVLVLT
TYDTDADVTRAIDAGATGYLLKAERPEELFAAIRAAAQGRTALSAPVAGRVMDRVRGVAGPALTARERDILGQLARGLGN
REIARALFISEATVKTHLGRIYTKLGVDTRAGAVAVAKEQRLLT

Nucleotide


Download         Length: 615 bp        

>NTDB_id=836550 U5072_RS12990 WP_031130883.1 3079764..3080378(+) (vraR) [Streptomyces sp. SS162]
ATCCGCGTCCTCCTCTGCGACGACCACGCCGTGGTGCGCGCCGGGCTGCTCGCCCTGCTGGGCAGCGAGCCGGGCATCGA
GGTGGCCGGCGAGGCGGGCAGCGGAGAGGAGGCGGTCGCCCGCGCGGCGCGGCTGCGGCCCGACGTGGTGCTGATGGACC
TCCAGCTGGGCCCCGGCATGGACGGCGTGGAGGCCACCCGCCGGATCGCCTCCCCCGAGGTCCGGGTCCTCGTCCTCACC
ACGTACGACACGGACGCCGACGTCACCCGCGCCATCGACGCGGGGGCCACCGGCTACCTCCTCAAGGCGGAGCGCCCGGA
GGAGCTGTTCGCCGCGATCCGTGCCGCCGCCCAGGGGCGCACGGCCCTGTCCGCGCCGGTCGCCGGCCGCGTCATGGACC
GGGTGCGCGGGGTGGCCGGGCCCGCCCTGACGGCCCGGGAGCGCGACATCCTCGGCCAGCTCGCACGCGGACTCGGCAAC
CGGGAGATCGCCCGCGCCCTCTTCATCAGCGAGGCGACGGTCAAGACCCATCTGGGCCGCATCTACACGAAGCTCGGCGT
CGACACCCGCGCGGGCGCCGTGGCGGTCGCCAAGGAGCAGCGCCTCCTGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(142-197)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.063

100

0.417
  degU Bacillus subtilis subsp. subtilis str. 168

36.697

100

0.392