Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   QNH42_RS07030 Genome accession   NZ_CP126108
Coordinates   1338055..1339011 (+) Length   318 a.a.
NCBI ID   WP_048010972.1    Uniprot ID   A0AA46SKU2
Organism   Cytobacillus firmus strain SQ11     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333055..1344011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH42_RS07010 (QNH42_07010) clpB 1333260..1335857 (+) 2598 WP_197245489.1 ATP-dependent chaperone ClpB -
  QNH42_RS07015 (QNH42_07015) - 1335927..1336118 (-) 192 WP_048010975.1 DUF2929 family protein -
  QNH42_RS07020 (QNH42_07020) - 1336300..1337037 (+) 738 WP_163143779.1 alpha/beta hydrolase -
  QNH42_RS07025 (QNH42_07025) - 1337118..1337945 (+) 828 WP_226619925.1 hypothetical protein -
  QNH42_RS07030 (QNH42_07030) med 1338055..1339011 (+) 957 WP_048010972.1 BMP family ABC transporter substrate-binding protein Regulator
  QNH42_RS07035 (QNH42_07035) comZ 1339041..1339229 (+) 189 WP_197245493.1 ComZ family protein Regulator
  QNH42_RS07040 (QNH42_07040) - 1339285..1339671 (-) 387 WP_226619926.1 hypothetical protein -
  QNH42_RS07045 (QNH42_07045) - 1339887..1340819 (+) 933 WP_226619927.1 beta-ketoacyl-ACP synthase III -
  QNH42_RS07050 (QNH42_07050) fabF 1341117..1342355 (+) 1239 WP_163143789.1 beta-ketoacyl-ACP synthase II -
  QNH42_RS07055 (QNH42_07055) - 1342594..1343259 (+) 666 WP_053071383.1 DUF2268 domain-containing putative Zn-dependent protease -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35572.16 Da        Isoelectric Point: 4.4144

>NTDB_id=836338 QNH42_RS07030 WP_048010972.1 1338055..1339011(+) (med) [Cytobacillus firmus strain SQ11]
MHKTLKKLGILLLCLLLLASCRQPMSAGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYDIEVYYKEGMNSEMVVERA
VKEFDQKGVNLIFGHGNEYAAYFNNISKKYPDIHFVSFNGDAQNENTTSLNFEAYAMGFFGGMVAGHMTKTNNVGILAAF
EWQPEVEGFYEGANYINDNVNVQIQYVGNWDNDNKAIALLDKLIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
SDLGESVVLTSTIQHVDVLYELVAEKYNEGELESGNLSFDFEDEVISLGKFSPDVDEEFKKELNAVIENYKKTGKLPE

Nucleotide


Download         Length: 957 bp        

>NTDB_id=836338 QNH42_RS07030 WP_048010972.1 1338055..1339011(+) (med) [Cytobacillus firmus strain SQ11]
ATGCATAAGACATTAAAGAAATTAGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCAGACAGCCGATGTCTGC
AGGAAAACTTGAGAAAGCTGGATTATTAGTGCCCGATACTGTCAATGACCAAGTATGGGGGACCAAAGGCTATAAAGGCA
TGCTAAAGATTCAATCCCATTATGATATTGAGGTTTATTATAAAGAAGGAATGAATTCAGAGATGGTTGTTGAAAGAGCA
GTTAAAGAGTTTGACCAAAAAGGTGTAAACCTGATCTTTGGACATGGCAATGAATACGCTGCATACTTTAATAACATCTC
AAAAAAATATCCTGACATTCACTTTGTCAGCTTTAATGGTGACGCCCAAAATGAAAACACCACCAGTTTGAACTTTGAAG
CATATGCCATGGGTTTCTTCGGAGGCATGGTTGCAGGACATATGACGAAAACGAATAATGTAGGAATACTGGCGGCTTTT
GAATGGCAGCCGGAAGTAGAAGGTTTTTATGAAGGTGCAAACTATATCAATGATAATGTAAACGTGCAGATCCAATATGT
CGGCAACTGGGACAATGATAACAAAGCCATCGCTCTTTTGGACAAACTTATTGCCAATAAGACAGATGTTGTATATCCGG
CCGGAGATGGGTATAATGTTCCTGTTATCGAAAAGCTGAAAGAAGAAGGGCTCTACGCCATCGGATATATTTCCGATCAG
TCTGATTTGGGTGAATCAGTCGTCCTGACCAGTACAATTCAGCATGTAGATGTTTTATATGAACTGGTGGCAGAAAAATA
TAACGAAGGCGAGCTTGAATCAGGAAATCTATCCTTCGATTTCGAGGATGAAGTGATTTCACTTGGGAAATTCAGCCCTG
ACGTTGACGAAGAATTCAAAAAAGAACTAAACGCTGTCATTGAGAATTACAAAAAAACAGGCAAATTGCCTGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.229

98.742

0.516