Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   SJJ41_RS20200 Genome accession   NZ_CP141102
Coordinates   4385433..4386845 (-) Length   470 a.a.
NCBI ID   WP_099173611.1    Uniprot ID   A0ABU8A364
Organism   Streptomyces sp. S584     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4380433..4391845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS20175 - 4380657..4381355 (-) 699 WP_315985667.1 hypothetical protein -
  SJJ41_RS20180 - 4381343..4381927 (-) 585 WP_147983522.1 SigE family RNA polymerase sigma factor -
  SJJ41_RS20185 - 4382111..4383013 (-) 903 WP_322984718.1 A/G-specific adenine glycosylase -
  SJJ41_RS20190 - 4383273..4384109 (+) 837 WP_322986829.1 hypothetical protein -
  SJJ41_RS20195 disA 4384228..4385352 (-) 1125 WP_099173610.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  SJJ41_RS20200 radA/sms 4385433..4386845 (-) 1413 WP_099173611.1 DNA repair protein RadA Machinery gene
  SJJ41_RS20205 - 4387032..4388792 (+) 1761 WP_416316234.1 BACON domain-containing protein -
  SJJ41_RS20210 - 4388899..4389741 (-) 843 WP_099173613.1 hypothetical protein -
  SJJ41_RS20215 - 4389774..4390721 (+) 948 WP_322984720.1 Ppx/GppA phosphatase family protein -
  SJJ41_RS20220 - 4390838..4391650 (+) 813 WP_187327152.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49545.65 Da        Isoelectric Point: 8.2515

>NTDB_id=836328 SJJ41_RS20200 WP_099173611.1 4385433..4386845(-) (radA/sms) [Streptomyces sp. S584]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGQVPAGMKVTEVADMGDALRVLPRRSRPDGPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=836328 SJJ41_RS20200 WP_099173611.1 4385433..4386845(-) (radA/sms) [Streptomyces sp. S584]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGCCCGTCCTACCGATGCACCGAATGCGGCTGGACGACGGCCAAATGGCT
CGGCCGCTGCCCGGAGTGCCAGGCATGGGGGACGGTCGAGGAGTTCGGCGGAGCCCCTGCGGTCCGTACGACGGCCGCGG
GGCGGGTCTCCACCGCCGCCGTGCCGATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGCTCCACCGGGGTCGGCGAG
CTGGACCGCGTGCTCGGCGGAGGGCTCGTGCCCGGCGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTGGGCAAGTCGAC
GCTGCTGCTGGACGTGGCCGCCAAGGCCGCGAGCGACGACCACCGGACGCTGTACGTCACGGCCGAGGAGTCCGCCAGCC
AGGTGCGGATGCGGGCCGACCGGATCCGGGCGATCAACGACCACCTCTATCTGGCGGCCGAGACCGACCTCTCCGCCGTG
CTGGGGCACCTGGACGCGGTCAAGCCGTCCCTCCTCGTCCTCGACTCCGTGCAGACCGTCGCCTCACCGGAGATCGAGGG
CGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCCGGCGCGCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCCCGGCTCCTGGAGCACCTCGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGCCTCCGGCTCGTGCGGGGCGTCAAGAACCGGTACGGCGCCACGGACGAGGTGGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCGGACCCCTCGGGGCTCTTCCTCACCCGCCGTGACGAGCCCGTCC
CCGGCACCTGTCTGACGGTCACCCTGGAGGGCAAGCGCCCGCTCGTCGCCGAGGTGCAGGCACTGACGGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCGCCCTCGGCAAGCGGGACATCTACAGCGCCACGGTGGGCGGCGTGAAGCTCACCGAGCCGGCCGCGGACC
TCGCCATCGCCCTGGCCCTGGCCAGCGCGGCCAGCGACACACCGCTGCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGG
CTCGCCGGGGAGGTCAGAAGGGTCACGGGGGTCCAGCGCAGGCTGGCGGAGGCGTACCGTCTCGGGTTCAAGCACGCCCT
GGTCCCGAGGGACCCGGGACAGGTCCCGGCCGGTATGAAGGTCACAGAAGTGGCCGACATGGGCGACGCCCTGAGAGTCC
TTCCCCGCCGCTCTCGGCCGGACGGACCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

41.943

96.383

0.404
  radA Streptococcus pneumoniae D39

41.943

96.383

0.404
  radA Streptococcus pneumoniae R6

41.943

96.383

0.404
  radA Streptococcus pneumoniae TIGR4

41.943

96.383

0.404
  radA Streptococcus mitis SK321

43.357

91.277

0.396
  radA Streptococcus mitis NCTC 12261

43.357

91.277

0.396