Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SJJ41_RS11165 Genome accession   NZ_CP141102
Coordinates   2511633..2512283 (+) Length   216 a.a.
NCBI ID   WP_322983667.1    Uniprot ID   -
Organism   Streptomyces sp. S584     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2506633..2517283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJJ41_RS11135 - 2506810..2507451 (-) 642 WP_322983665.1 TetR/AcrR family transcriptional regulator -
  SJJ41_RS11140 - 2507534..2508316 (+) 783 WP_124274707.1 ABC transporter ATP-binding protein -
  SJJ41_RS11145 - 2508324..2509073 (+) 750 WP_319654113.1 ABC transporter permease -
  SJJ41_RS11150 - 2509130..2509702 (+) 573 WP_129265459.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  SJJ41_RS11155 - 2509704..2510261 (-) 558 WP_319654114.1 hypothetical protein -
  SJJ41_RS11160 - 2510359..2511636 (+) 1278 WP_388737029.1 sensor histidine kinase -
  SJJ41_RS11165 vraR 2511633..2512283 (+) 651 WP_322983667.1 response regulator transcription factor Regulator
  SJJ41_RS11170 - 2512444..2514327 (+) 1884 WP_322983668.1 glycoside hydrolase family 18 chitinase -
  SJJ41_RS11175 - 2514533..2514979 (-) 447 WP_014154045.1 DUF2550 domain-containing protein -
  SJJ41_RS11180 - 2515122..2515496 (-) 375 WP_099174454.1 F0F1 ATP synthase subunit epsilon -
  SJJ41_RS11185 atpD 2515606..2517048 (-) 1443 WP_099174455.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22990.49 Da        Isoelectric Point: 4.7633

>NTDB_id=836306 SJJ41_RS11165 WP_322983667.1 2511633..2512283(+) (vraR) [Streptomyces sp. S584]
MTIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGEAAVRLARELRPDVVLMDVQMPRLDGVSATRQVVAERLADVLV
LTTFDLDEYVFGALRAGASGFLLKNTEAGDLIDAVRTVARGEGMIAPAVTRRLIEEFAGSTAPRRADGPGREVLDALTRR
EREVLGCLGEGLSNAEIAGRLQMAEATVKTHVSRLLGKLELRSRVQAAVLAQELGL

Nucleotide


Download         Length: 651 bp        

>NTDB_id=836306 SJJ41_RS11165 WP_322983667.1 2511633..2512283(+) (vraR) [Streptomyces sp. S584]
ATGACGATCCGGGTACTGGTCGCCGAGGACCAGTCGGCGGTGCGCGCGGGGCTGGTGCTGATCCTGGGCAGCGCGCCGGA
CATCGAGGTCGTGGGCGAGGCGGCCGACGGCGAGGCCGCCGTGCGCCTGGCGCGTGAACTGCGCCCGGATGTGGTGCTGA
TGGACGTACAGATGCCCCGGCTCGACGGGGTGTCCGCGACCCGGCAGGTGGTGGCGGAGCGGCTGGCGGACGTGCTGGTG
CTGACCACCTTCGACCTGGACGAGTACGTCTTCGGCGCACTGCGGGCGGGCGCGTCGGGCTTCCTGCTGAAGAACACCGA
GGCCGGCGACCTGATCGACGCGGTACGCACGGTGGCGCGCGGCGAGGGCATGATCGCCCCCGCCGTCACCCGCCGGCTGA
TCGAGGAGTTCGCCGGGAGCACCGCCCCGCGCAGGGCGGACGGGCCGGGCCGCGAGGTCCTGGACGCGCTGACCCGGCGG
GAGCGGGAGGTCCTTGGCTGCCTCGGCGAGGGGCTGTCGAACGCGGAGATCGCCGGGCGTCTCCAGATGGCGGAGGCCAC
GGTGAAGACCCATGTCAGCAGGCTCCTGGGAAAGCTGGAGCTGCGCAGCAGGGTCCAAGCGGCGGTGCTGGCTCAGGAGT
TGGGCCTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.935

100

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

40.541

100

0.417