Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QNH19_RS17065 Genome accession   NZ_CP126104
Coordinates   3457834..3458523 (-) Length   229 a.a.
NCBI ID   WP_197200179.1    Uniprot ID   -
Organism   Bacillus velezensis strain MB7_B11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3452834..3463523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH19_RS17030 (QNH19_17030) fliW 3452925..3453356 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  QNH19_RS17035 (QNH19_17035) - 3453386..3453955 (-) 570 WP_032867077.1 DUF6470 family protein -
  QNH19_RS17040 (QNH19_17040) flgL 3454046..3454963 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  QNH19_RS17045 (QNH19_17045) flgK 3454975..3456492 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  QNH19_RS17050 (QNH19_17050) - 3456508..3456990 (-) 483 WP_003151394.1 flagellar protein FlgN -
  QNH19_RS17055 (QNH19_17055) flgM 3457005..3457271 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH19_RS17060 (QNH19_17060) - 3457341..3457760 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  QNH19_RS17065 (QNH19_17065) comFC 3457834..3458523 (-) 690 WP_197200179.1 double zinc ribbon domain-containing protein Machinery gene
  QNH19_RS17070 (QNH19_17070) - 3458529..3458813 (-) 285 WP_007407481.1 competence protein ComFB -
  QNH19_RS17075 (QNH19_17075) comFA 3458871..3460256 (-) 1386 WP_283887278.1 DEAD/DEAH box helicase Machinery gene
  QNH19_RS17080 (QNH19_17080) - 3460366..3461214 (-) 849 WP_003151387.1 DegV family protein -
  QNH19_RS17085 (QNH19_17085) degU 3461312..3462001 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNH19_RS17090 (QNH19_17090) degS 3462078..3463241 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25257.89 Da        Isoelectric Point: 8.0779

>NTDB_id=836125 QNH19_RS17065 WP_197200179.1 3457834..3458523(-) (comFC) [Bacillus velezensis strain MB7_B11]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=836125 QNH19_RS17065 WP_197200179.1 3457834..3458523(-) (comFC) [Bacillus velezensis strain MB7_B11]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAACTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594