Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH19_RS01775 Genome accession   NZ_CP126104
Coordinates   329784..330221 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain MB7_B11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 324784..335221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH19_RS01750 (QNH19_01750) - 325804..326940 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  QNH19_RS01755 (QNH19_01755) - 326955..327389 (+) 435 WP_012116767.1 RDD family protein -
  QNH19_RS01760 (QNH19_01760) - 327461..327784 (+) 324 WP_007409357.1 YckD family protein -
  QNH19_RS01765 (QNH19_01765) - 327888..329324 (+) 1437 WP_025284208.1 family 1 glycosylhydrolase -
  QNH19_RS01770 (QNH19_01770) nin/comJ 329365..329763 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  QNH19_RS01775 (QNH19_01775) nucA/comI 329784..330221 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNH19_RS01780 (QNH19_01780) hxlB 330580..331137 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  QNH19_RS01785 (QNH19_01785) hxlA 331134..331769 (-) 636 WP_283887729.1 3-hexulose-6-phosphate synthase -
  QNH19_RS01790 (QNH19_01790) - 332002..332364 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=836067 QNH19_RS01775 WP_003156588.1 329784..330221(-) (nucA/comI) [Bacillus velezensis strain MB7_B11]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=836067 QNH19_RS01775 WP_003156588.1 329784..330221(-) (nucA/comI) [Bacillus velezensis strain MB7_B11]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641