Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   QNH44_RS07055 Genome accession   NZ_CP126102
Coordinates   1328236..1329192 (+) Length   318 a.a.
NCBI ID   WP_258750006.1    Uniprot ID   -
Organism   Cytobacillus firmus strain LN5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323236..1334192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH44_RS07035 (QNH44_07035) clpB 1323441..1326038 (+) 2598 WP_283914186.1 ATP-dependent chaperone ClpB -
  QNH44_RS07040 (QNH44_07040) - 1326108..1326299 (-) 192 WP_048010975.1 DUF2929 family protein -
  QNH44_RS07045 (QNH44_07045) - 1326481..1327218 (+) 738 WP_163143779.1 alpha/beta hydrolase -
  QNH44_RS07050 (QNH44_07050) - 1327299..1328126 (+) 828 WP_227886532.1 hypothetical protein -
  QNH44_RS07055 (QNH44_07055) med 1328236..1329192 (+) 957 WP_258750006.1 BMP family ABC transporter substrate-binding protein Regulator
  QNH44_RS07060 (QNH44_07060) comZ 1329222..1329410 (+) 189 WP_283914187.1 ComZ family protein Regulator
  QNH44_RS07065 (QNH44_07065) - 1329464..1329850 (-) 387 WP_227886534.1 hypothetical protein -
  QNH44_RS07070 (QNH44_07070) - 1330065..1330997 (+) 933 WP_258750007.1 beta-ketoacyl-ACP synthase III -
  QNH44_RS07075 (QNH44_07075) fabF 1331044..1332282 (+) 1239 WP_258750008.1 beta-ketoacyl-ACP synthase II -
  QNH44_RS07080 (QNH44_07080) - 1332521..1333186 (+) 666 WP_053071383.1 DUF2268 domain-containing putative Zn-dependent protease -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35545.14 Da        Isoelectric Point: 4.4144

>NTDB_id=835985 QNH44_RS07055 WP_258750006.1 1328236..1329192(+) (med) [Cytobacillus firmus strain LN5]
MHKTLKKLGILLLCLLLLASCRQPMSAGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYDIEVYYKEGMNSEMVVERA
VKEFDQKGVNLIFGHGNEYAAYFNSISKKYPDIHFVSFNGDAQNENTTSLNFEAYAMGFFGGMVAGHMTKTNNVGILAAF
EWQPEVEGFYEGANYINDNVNVQIQYVGNWDNDNKAIALLDKLIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
SDLGESVVLTSTIQHVDVLYELVAEKYNEGELESGNLSFDFEDEVISLGKFSPDVDEEFKKELNAVIENYKKTGKLPE

Nucleotide


Download         Length: 957 bp        

>NTDB_id=835985 QNH44_RS07055 WP_258750006.1 1328236..1329192(+) (med) [Cytobacillus firmus strain LN5]
ATGCATAAGACATTAAAGAAATTAGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCAGACAGCCGATGTCTGC
AGGAAAACTTGAGAAAGCTGGATTATTAGTGCCCGATACTGTCAATGACCAAGTATGGGGGACCAAAGGCTATAAAGGCA
TGCTAAAGATTCAATCCCATTATGATATTGAGGTTTATTATAAAGAAGGAATGAATTCAGAGATGGTTGTTGAAAGAGCA
GTTAAAGAGTTTGACCAAAAAGGTGTAAACCTGATCTTTGGACATGGCAATGAATACGCTGCATACTTTAATAGCATCTC
AAAAAAATATCCTGACATTCACTTTGTCAGCTTTAATGGTGACGCCCAAAATGAAAACACCACCAGTTTGAACTTTGAAG
CATATGCCATGGGTTTCTTCGGAGGTATGGTTGCAGGACATATGACGAAAACGAATAATGTAGGAATACTGGCGGCTTTT
GAATGGCAGCCGGAAGTAGAAGGTTTTTATGAAGGTGCAAACTATATCAATGATAATGTAAACGTGCAGATCCAATATGT
CGGCAACTGGGACAATGATAACAAAGCCATCGCTCTTTTGGACAAACTTATTGCCAATAAGACAGATGTTGTATATCCGG
CCGGAGATGGGTATAATGTTCCTGTTATCGAAAAGCTGAAAGAAGAAGGGCTCTACGCCATCGGCTATATTTCCGATCAG
TCTGATTTGGGTGAATCAGTCGTCCTGACCAGTACAATTCAGCATGTAGATGTTTTATATGAACTGGTGGCAGAAAAATA
TAACGAAGGCGAGCTTGAATCAGGAAATCTATCCTTCGATTTCGAGGATGAAGTGATTTCACTTGGAAAATTCAGCCCTG
ACGTCGACGAAGAATTCAAAAAAGAACTAAACGCTGTCATTGAGAATTACAAAAAAACAGGCAAATTGCCTGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.229

98.742

0.516