Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH41_RS13375 Genome accession   NZ_CP126100
Coordinates   2596677..2597747 (-) Length   356 a.a.
NCBI ID   WP_095713275.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2591677..2602747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS13330 (QNH41_13330) tapA 2592152..2592913 (-) 762 WP_106020093.1 amyloid fiber anchoring/assembly protein TapA -
  QNH41_RS13335 (QNH41_13335) - 2593190..2593513 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  QNH41_RS13340 (QNH41_13340) - 2593556..2593735 (-) 180 WP_003236949.1 YqzE family protein -
  QNH41_RS13345 (QNH41_13345) comGG 2593807..2594181 (-) 375 WP_106020094.1 competence type IV pilus minor pilin ComGG Machinery gene
  QNH41_RS13350 (QNH41_13350) comGF 2594182..2594565 (-) 384 WP_038954226.1 competence type IV pilus minor pilin ComGF Machinery gene
  QNH41_RS13355 (QNH41_13355) comGE 2594591..2594938 (-) 348 WP_106020095.1 competence type IV pilus minor pilin ComGE Machinery gene
  QNH41_RS13360 (QNH41_13360) comGD 2594922..2595353 (-) 432 WP_255003480.1 competence type IV pilus minor pilin ComGD Machinery gene
  QNH41_RS13365 (QNH41_13365) comGC 2595343..2595639 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH41_RS13370 (QNH41_13370) comGB 2595653..2596690 (-) 1038 WP_106020096.1 competence type IV pilus assembly protein ComGB Machinery gene
  QNH41_RS13375 (QNH41_13375) comGA 2596677..2597747 (-) 1071 WP_095713275.1 competence protein ComGA Machinery gene
  QNH41_RS13380 (QNH41_13380) - 2598068..2598478 (-) 411 WP_106020097.1 CBS domain-containing protein -
  QNH41_RS13385 (QNH41_13385) - 2598541..2599494 (-) 954 WP_095713277.1 magnesium transporter CorA family protein -
  QNH41_RS13390 (QNH41_13390) - 2599638..2600967 (+) 1330 Protein_2591 hemolysin family protein -
  QNH41_RS13395 (QNH41_13395) - 2601047..2601886 (-) 840 WP_024122051.1 STAS domain-containing protein -
  QNH41_RS13405 (QNH41_13405) mgsR 2602119..2602499 (-) 381 WP_026014741.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40480.69 Da        Isoelectric Point: 8.8394

>NTDB_id=835900 QNH41_RS13375 WP_095713275.1 2596677..2597747(-) (comGA) [Bacillus halotolerans strain LN2]
MDSIEKISKTLIEEAYRTKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGDVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLIQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAQIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCEDGCSSVYCRLSRNVRRASVYELLYGKNLQQCIQEAKGD
NANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=835900 QNH41_RS13375 WP_095713275.1 2596677..2597747(-) (comGA) [Bacillus halotolerans strain LN2]
TTGGATTCGATAGAAAAAATAAGCAAAACTTTAATTGAAGAGGCATATAGGACGAAGGCCTCTGACATTCACATTGTGCC
GAGGGAACGGGACGCAATCATTCATTTTCGGGTTGACCATGCATTGCTGAAAAAGCGAAACATGAAAAAAGAAGAGTGTG
TAAGACTCATTTCTCATTTTAAGTTTCTCTCAGCTATGGACATAGGGGAAAGAAGAAAGCCGCAAAATGGATCTCTTACT
CTAAAATTAAAAGAGGGTGACGTTCACTTAAGGATGTCAACGCTCCCGACAATTAACGAAGAAAGCCTCGTCATCAGAGT
GATGCCTCAGTATAATATCCCTTCGATTGACAAACTGTCTTTATTCCCAAAGACAGGAGCCACCTTGCTATCATTTTTAA
AACACTCCCACGGCATGCTGATTTTTACCGGACCAACAGGCTCTGGGAAAACAACAACATTATATTCTCTGATCCAATAT
GCAAAAAAACATTTTAATCGAAACATTGTCACACTTGAAGATCCAGTGGAAACGAGGGATGAAGATGTTCTTCAAGTGCA
GGTGAATGAAAAAGCCGGTGTCACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCCGATATGATCATCTTAG
GTGAGATTAGAGACGCTGAAACAGCCCAAATTGCGGTGCGGGCAGCGATGACTGGTCATTTAGTGCTGACGAGCCTTCAT
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTTGGCATTAATATGAATGAAATCGAGCAAACGGTTATTGC
GATAGCGGCTCAGCGTTTAGTTGATTTGGCTTGCCCGTTTTGTGAAGACGGATGTTCATCAGTGTATTGCCGCCTGTCAC
GAAATGTCAGGAGAGCAAGCGTATACGAGCTGCTTTACGGGAAAAACCTTCAGCAGTGTATCCAGGAAGCGAAAGGGGAC
AATGCAAATTACCAATATCAAACGCTGCGTCAAATTATAAGAAAAGGGATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.067

100

0.961