Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QNH41_RS08810 Genome accession   NZ_CP126100
Coordinates   1705755..1706657 (+) Length   300 a.a.
NCBI ID   WP_283912982.1    Uniprot ID   -
Organism   Bacillus halotolerans strain LN2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1700755..1711657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS08790 (QNH41_08790) - 1701424..1703154 (+) 1731 WP_283912981.1 hypothetical protein -
  QNH41_RS08795 (QNH41_08795) - 1703151..1703432 (+) 282 WP_095713833.1 FlhB-like flagellar biosynthesis protein -
  QNH41_RS08800 (QNH41_08800) sucC 1703606..1704763 (+) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  QNH41_RS08805 (QNH41_08805) sucD 1704792..1705694 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  QNH41_RS08810 (QNH41_08810) dprA 1705755..1706657 (+) 903 WP_283912982.1 DNA-processing protein DprA Machinery gene
  QNH41_RS08815 (QNH41_08815) topA 1706848..1708923 (+) 2076 WP_283912983.1 type I DNA topoisomerase -
  QNH41_RS08820 (QNH41_08820) trmFO 1708999..1710306 (+) 1308 WP_283912984.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH41_RS08825 (QNH41_08825) xerC 1710374..1711288 (+) 915 WP_283912985.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33003.27 Da        Isoelectric Point: 9.2088

>NTDB_id=835884 QNH41_RS08810 WP_283912982.1 1705755..1706657(+) (dprA) [Bacillus halotolerans strain LN2]
MDQAAACLITCRINQLLSPSLLLKWWKADPSMSLSNPSCAALETASRGKVRAAALKNKIEEQYPKLQHLLSVYQQQGIKV
IPISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSH
AASIKAKGRTIGVIAGGFQNIYPLENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSL
ITAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 903 bp        

>NTDB_id=835884 QNH41_RS08810 WP_283912982.1 1705755..1706657(+) (dprA) [Bacillus halotolerans strain LN2]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGTCAAATCCTTCATGTGCAGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGG
CACTAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCAACAGCAAGGCATTAAAGTC
ATCCCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGA
TATATCCCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCCTATGGAATCCAGGTTGTCA
ATCATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTAGCGTCTGGGATTGACGGATTGTCCCAT
GCTGCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCTAGAAAATCT
TCAATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATT
TCCCTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTG
ATTACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGG
TCCTATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAAAAACG
TTCAATATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83

100

0.83
  dprA Lactococcus lactis subsp. cremoris KW2

40.288

92.667

0.373
  dprA Legionella pneumophila strain ERS1305867

39.716

94

0.373