Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH45_RS21455 Genome accession   NZ_CP126099
Coordinates   4120193..4121932 (-) Length   579 a.a.
NCBI ID   WP_098815592.1    Uniprot ID   A0A2C4Q4T2
Organism   Bacillus wiedmannii strain LN15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4115193..4126932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH45_RS21440 (QNH45_21440) - 4116878..4117441 (-) 564 WP_283882648.1 PRK06770 family protein -
  QNH45_RS21445 (QNH45_21445) spo0A 4117694..4118488 (-) 795 WP_033656399.1 sporulation transcription factor Spo0A Regulator
  QNH45_RS21450 (QNH45_21450) spoIVB 4118776..4120074 (-) 1299 WP_283882650.1 SpoIVB peptidase -
  QNH45_RS21455 (QNH45_21455) recN 4120193..4121932 (-) 1740 WP_098815592.1 DNA repair protein RecN Machinery gene
  QNH45_RS21460 (QNH45_21460) argR 4122198..4122647 (-) 450 WP_001032581.1 arginine repressor ArgR -
  QNH45_RS21465 (QNH45_21465) - 4122790..4123629 (-) 840 WP_001274750.1 TlyA family RNA methyltransferase -
  QNH45_RS21470 (QNH45_21470) dxs 4123633..4125525 (-) 1893 WP_000366437.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH45_RS21475 (QNH45_21475) ispA 4125828..4126718 (-) 891 WP_048562336.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65667.74 Da        Isoelectric Point: 4.8223

>NTDB_id=835835 QNH45_RS21455 WP_098815592.1 4120193..4121932(-) (recN) [Bacillus wiedmannii strain LN15]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
GIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEISKADLKMDEEIELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILQEATSLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=835835 QNH45_RS21455 WP_098815592.1 4120193..4121932(-) (recN) [Bacillus wiedmannii strain LN15]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGGTTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGCTATTTTATGTAGAAGATGATAAGCATCCGTGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGGAAACTGGTCACCCTTAGTATATTAAAGGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACACAAGATTTAATGAATGAAGAGCGTCATCTATTTATGCTTGATCATTTTGATGGAGATCGCATTGTTAAACAATTG
GGTATATATCAAAATGTATATGCTGACTATGAGAAATTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCAGTAAGGCGGATTTAAAGATGGATGAAGAAATTGAAT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGCGATGCATATCGCTCGTTAAGTGCC
GATGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAACCATGATTCAATTGCAAATAGCTACTACTTATTAGAAGAAGTTGCATATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAAGCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGCAAGAAGCAACGTCGTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAGAAAACAAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCTGAAGAGCCTCTTGTTGAGGGTGCCCCGGTAAGACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGGGTTGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C4Q4T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601