Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH16_RS16760 Genome accession   NZ_CP126098
Coordinates   3520118..3521194 (-) Length   358 a.a.
NCBI ID   WP_283867957.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LC22     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3515118..3526194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH16_RS16720 (QNH16_16720) - 3515987..3516784 (+) 798 WP_034308370.1 YqhG family protein -
  QNH16_RS16725 (QNH16_16725) - 3516828..3517013 (-) 186 WP_057278811.1 YqzE family protein -
  QNH16_RS16730 (QNH16_16730) comGG 3517129..3517515 (-) 387 WP_053535692.1 competence type IV pilus minor pilin ComGG -
  QNH16_RS16735 (QNH16_16735) comGF 3517508..3517987 (-) 480 WP_082201156.1 competence type IV pilus minor pilin ComGF -
  QNH16_RS16740 (QNH16_16740) - 3517935..3518273 (-) 339 WP_283866059.1 hypothetical protein -
  QNH16_RS16745 (QNH16_16745) comGD 3518260..3518703 (-) 444 WP_283866060.1 competence type IV pilus minor pilin ComGD -
  QNH16_RS16750 (QNH16_16750) comGC 3518711..3519022 (-) 312 WP_034308384.1 competence type IV pilus major pilin ComGC -
  QNH16_RS16755 (QNH16_16755) comGB 3519100..3520134 (-) 1035 WP_034308386.1 competence type IV pilus assembly protein ComGB -
  QNH16_RS16760 (QNH16_16760) comGA 3520118..3521194 (-) 1077 WP_283867957.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH16_RS16765 (QNH16_16765) - 3521299..3521679 (-) 381 WP_034308388.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH16_RS16770 (QNH16_16770) - 3521895..3522596 (+) 702 WP_034308391.1 helix-turn-helix domain-containing protein -
  QNH16_RS16775 (QNH16_16775) - 3522682..3522924 (+) 243 WP_034308393.1 DUF2626 domain-containing protein -
  QNH16_RS16780 (QNH16_16780) - 3522977..3524098 (-) 1122 WP_283866061.1 SAM-dependent methyltransferase -
  QNH16_RS16785 (QNH16_16785) - 3524380..3525006 (-) 627 WP_057278817.1 MBL fold metallo-hydrolase -
  QNH16_RS16790 (QNH16_16790) - 3525240..3525413 (+) 174 WP_034308396.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39784.44 Da        Isoelectric Point: 8.7572

>NTDB_id=835778 QNH16_RS16760 WP_283867957.1 3520118..3521194(-) (comGA) [Peribacillus frigoritolerans strain LC22]
MISIEKTAEKILTRAIVESASDIHIFFRGEGPHIQFRIDNKLVPQETLSFFEAERLIAHLKFLASMDIGEKRRPQSGAIT
INLANQVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPNTVQKLIALLKHSHGMLIFTGPTGSGKTTTLYSLLHH
AHEMINRNIITLEDPIENVSEKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEVRDAETAKIAVRAALTGHLILTTMH
TRDAQGAISRLLEFGVSLLEVEQTLIGVTAQRLVELRCLPCKGDCALACKMTARNKRASVYELLYGKSLAEVLRIMGDEK
GKATVSYRQLKDEIGKAVVMGYVGSQEYERLVYHETKK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=835778 QNH16_RS16760 WP_283867957.1 3520118..3521194(-) (comGA) [Peribacillus frigoritolerans strain LC22]
TTGATATCGATTGAAAAGACCGCAGAAAAAATACTAACCCGTGCCATCGTGGAATCGGCATCGGATATCCACATTTTTTT
TCGCGGAGAGGGGCCTCACATCCAATTCAGGATAGACAATAAGCTTGTTCCCCAGGAAACATTATCATTCTTTGAAGCTG
AAAGGCTGATCGCTCATTTGAAGTTCCTTGCCTCGATGGATATAGGGGAGAAAAGGAGGCCCCAGAGTGGTGCCATCACC
ATCAATTTGGCTAACCAGGTGGTCGGACTCCGCCTTTCCACTTTACCCACTGCCCATCTCGAAAGTTTGGTCATCCGCTT
AATACCCCAACAGAATATCCTTCCTCTAGAACAGTTATCCTTATTTCCAAACACCGTTCAAAAATTGATTGCACTCCTGA
AGCATTCCCATGGCATGCTCATATTTACCGGCCCGACCGGCAGCGGGAAAACCACGACACTATATTCCCTGCTTCACCAC
GCCCATGAGATGATCAATCGAAATATCATTACACTTGAAGATCCCATTGAAAATGTATCCGAAAAGGTATTGCAAGTCCA
AATCAATGAAAAGGCGGGCATTACGTATTCAGTCGGCCTAAAAGCTGTTCTGAGGCATGACCCGGACGTGATCATGGTTG
GGGAAGTCAGGGATGCAGAAACTGCCAAAATCGCAGTCCGTGCCGCATTAACCGGTCATTTGATACTAACGACCATGCAT
ACGAGGGACGCCCAGGGCGCCATCTCGAGATTACTGGAATTTGGTGTCAGCTTACTTGAGGTTGAACAGACTTTGATTGG
CGTGACAGCGCAGCGGCTGGTTGAATTGCGATGTCTTCCGTGTAAAGGGGACTGTGCTTTAGCTTGCAAAATGACTGCAA
GGAATAAAAGGGCAAGTGTATATGAATTGCTATATGGAAAAAGTCTGGCTGAAGTTCTCCGGATAATGGGAGATGAAAAA
GGTAAGGCAACGGTCAGCTACCGCCAATTAAAGGATGAAATCGGAAAAGCGGTTGTGATGGGCTATGTGGGATCTCAGGA
ATATGAACGGCTGGTCTACCATGAAACCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.742

99.721

0.556
  pilB Haemophilus influenzae 86-028NP

38.218

97.207

0.372
  pilB Glaesserella parasuis strain SC1401

38.372

96.089

0.369