Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QNK06_RS19430 Genome accession   NZ_CP126097
Coordinates   3646938..3647627 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain KF24     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3641938..3652627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS19395 (QNK06_19395) flgN 3642118..3642600 (-) 483 WP_283933816.1 flagellar protein FlgN -
  QNK06_RS19400 (QNK06_19400) flgM 3642616..3642882 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNK06_RS19405 (QNK06_19405) yvyF 3642963..3643382 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QNK06_RS19410 (QNK06_19410) comFC 3643456..3644178 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QNK06_RS19415 (QNK06_19415) comFB 3644142..3644438 (-) 297 WP_015483764.1 late competence protein ComFB -
  QNK06_RS19420 (QNK06_19420) comFA 3644498..3645889 (-) 1392 WP_021480715.1 ATP-dependent helicase ComFA Machinery gene
  QNK06_RS19425 (QNK06_19425) fakBA 3645995..3646840 (-) 846 WP_163117111.1 DegV family protein -
  QNK06_RS19430 (QNK06_19430) degU 3646938..3647627 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNK06_RS19435 (QNK06_19435) degS 3647710..3648867 (-) 1158 WP_283933817.1 two-component sensor histidine kinase DegS Regulator
  QNK06_RS19440 (QNK06_19440) yvyE 3649084..3649737 (+) 654 WP_003227979.1 YigZ family protein -
  QNK06_RS19445 (QNK06_19445) tagV 3649737..3650912 (+) 1176 WP_283933818.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  QNK06_RS19450 (QNK06_19450) tagO 3650985..3652061 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=835745 QNK06_RS19430 WP_003219701.1 3646938..3647627(-) (degU) [Bacillus subtilis strain KF24]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=835745 QNK06_RS19430 WP_003219701.1 3646938..3647627(-) (degU) [Bacillus subtilis strain KF24]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCAGAAATCCGC
AGACCATTACATATCTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1