Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QNK06_RS19420 Genome accession   NZ_CP126097
Coordinates   3644498..3645889 (-) Length   463 a.a.
NCBI ID   WP_021480715.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3639498..3650889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS19385 (QNK06_19385) flgL 3639669..3640565 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  QNK06_RS19390 (QNK06_19390) flgK 3640576..3642099 (-) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  QNK06_RS19395 (QNK06_19395) flgN 3642118..3642600 (-) 483 WP_283933816.1 flagellar protein FlgN -
  QNK06_RS19400 (QNK06_19400) flgM 3642616..3642882 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNK06_RS19405 (QNK06_19405) yvyF 3642963..3643382 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QNK06_RS19410 (QNK06_19410) comFC 3643456..3644178 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QNK06_RS19415 (QNK06_19415) comFB 3644142..3644438 (-) 297 WP_015483764.1 late competence protein ComFB -
  QNK06_RS19420 (QNK06_19420) comFA 3644498..3645889 (-) 1392 WP_021480715.1 ATP-dependent helicase ComFA Machinery gene
  QNK06_RS19425 (QNK06_19425) fakBA 3645995..3646840 (-) 846 WP_163117111.1 DegV family protein -
  QNK06_RS19430 (QNK06_19430) degU 3646938..3647627 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNK06_RS19435 (QNK06_19435) degS 3647710..3648867 (-) 1158 WP_283933817.1 two-component sensor histidine kinase DegS Regulator
  QNK06_RS19440 (QNK06_19440) yvyE 3649084..3649737 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52559.49 Da        Isoelectric Point: 9.7751

>NTDB_id=835744 QNK06_RS19420 WP_021480715.1 3644498..3645889(-) (comFA) [Bacillus subtilis strain KF24]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=835744 QNK06_RS19420 WP_021480715.1 3644498..3645889(-) (comFA) [Bacillus subtilis strain KF24]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.272

100

0.983