Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QNK06_RS17415 Genome accession   NZ_CP126097
Coordinates   3243740..3244384 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3238740..3249384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS17380 (QNK06_17380) mrpB 3239932..3240363 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  QNK06_RS17385 (QNK06_17385) mrpC 3240363..3240704 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QNK06_RS17390 (QNK06_17390) mrpD 3240697..3242178 (+) 1482 WP_283933734.1 Na+/H+ antiporter subunit D -
  QNK06_RS17395 (QNK06_17395) mrpE 3242184..3242660 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  QNK06_RS17400 (QNK06_17400) mrpF 3242660..3242944 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QNK06_RS17405 (QNK06_17405) mnhG 3242928..3243302 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  QNK06_RS17410 (QNK06_17410) yuxO 3243341..3243721 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  QNK06_RS17415 (QNK06_17415) comA 3243740..3244384 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QNK06_RS17420 (QNK06_17420) comP 3244465..3246765 (-) 2301 WP_088300729.1 histidine kinase Regulator
  QNK06_RS17425 (QNK06_17425) comX 3246777..3246941 (-) 165 WP_015384519.1 competence pheromone ComX -
  QNK06_RS17430 (QNK06_17430) - 3246954..3247814 (-) 861 WP_128422373.1 polyprenyl synthetase family protein -
  QNK06_RS17435 (QNK06_17435) degQ 3247999..3248139 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QNK06_RS17440 (QNK06_17440) - 3248361..3248486 (+) 126 WP_144500545.1 hypothetical protein -
  QNK06_RS17445 (QNK06_17445) - 3248600..3248968 (+) 369 WP_144500544.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=835737 QNK06_RS17415 WP_003220716.1 3243740..3244384(-) (comA) [Bacillus subtilis strain KF24]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=835737 QNK06_RS17415 WP_003220716.1 3243740..3244384(-) (comA) [Bacillus subtilis strain KF24]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1