Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNK06_RS01945 Genome accession   NZ_CP126097
Coordinates   362841..363290 (-) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis strain KF24     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357841..368290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS01910 (QNK06_01910) yckA 358124..358804 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  QNK06_RS01915 (QNK06_01915) yckB 358814..359677 (-) 864 WP_283934040.1 transporter substrate-binding domain-containing protein -
  QNK06_RS01920 (QNK06_01920) - 359839..360027 (+) 189 Protein_337 hypothetical protein -
  QNK06_RS01925 (QNK06_01925) - 360063..360378 (+) 316 Protein_338 RDD family protein -
  QNK06_RS01930 (QNK06_01930) yckD 360460..360792 (+) 333 WP_015252849.1 YckD family protein -
  QNK06_RS01935 (QNK06_01935) bglC 360946..362379 (+) 1434 WP_283934041.1 6-phospho-beta-glucosidase -
  QNK06_RS01940 (QNK06_01940) nin/comJ 362416..362814 (-) 399 WP_032724914.1 DNA-entry nuclease inhibitor Regulator
  QNK06_RS01945 (QNK06_01945) nucA/comI 362841..363290 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  QNK06_RS01950 (QNK06_01950) tlpC 363458..365179 (-) 1722 WP_128746904.1 methyl-accepting chemotaxis protein TlpC -
  QNK06_RS01955 (QNK06_01955) hxlB 365289..365846 (-) 558 WP_021481820.1 6-phospho-3-hexuloisomerase -
  QNK06_RS01960 (QNK06_01960) hxlA 365852..366484 (-) 633 WP_283934042.1 3-hexulose-6-phosphate synthase -
  QNK06_RS01965 (QNK06_01965) hxlR 366716..367078 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=835682 QNK06_RS01945 WP_014475770.1 362841..363290(-) (nucA/comI) [Bacillus subtilis strain KF24]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=835682 QNK06_RS01945 WP_014475770.1 362841..363290(-) (nucA/comI) [Bacillus subtilis strain KF24]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987