Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   QNK06_RS01940 Genome accession   NZ_CP126097
Coordinates   362416..362814 (-) Length   132 a.a.
NCBI ID   WP_032724914.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 357416..367814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS01910 (QNK06_01910) yckA 358124..358804 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  QNK06_RS01915 (QNK06_01915) yckB 358814..359677 (-) 864 WP_283934040.1 transporter substrate-binding domain-containing protein -
  QNK06_RS01920 (QNK06_01920) - 359839..360027 (+) 189 Protein_337 hypothetical protein -
  QNK06_RS01925 (QNK06_01925) - 360063..360378 (+) 316 Protein_338 RDD family protein -
  QNK06_RS01930 (QNK06_01930) yckD 360460..360792 (+) 333 WP_015252849.1 YckD family protein -
  QNK06_RS01935 (QNK06_01935) bglC 360946..362379 (+) 1434 WP_283934041.1 6-phospho-beta-glucosidase -
  QNK06_RS01940 (QNK06_01940) nin/comJ 362416..362814 (-) 399 WP_032724914.1 DNA-entry nuclease inhibitor Regulator
  QNK06_RS01945 (QNK06_01945) nucA/comI 362841..363290 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  QNK06_RS01950 (QNK06_01950) tlpC 363458..365179 (-) 1722 WP_128746904.1 methyl-accepting chemotaxis protein TlpC -
  QNK06_RS01955 (QNK06_01955) hxlB 365289..365846 (-) 558 WP_021481820.1 6-phospho-3-hexuloisomerase -
  QNK06_RS01960 (QNK06_01960) hxlA 365852..366484 (-) 633 WP_283934042.1 3-hexulose-6-phosphate synthase -
  QNK06_RS01965 (QNK06_01965) hxlR 366716..367078 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14976.96 Da        Isoelectric Point: 4.8991

>NTDB_id=835681 QNK06_RS01940 WP_032724914.1 362416..362814(-) (nin/comJ) [Bacillus subtilis strain KF24]
MIKSWKPQELSISYHQFTVFQKDTTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=835681 QNK06_RS01940 WP_032724914.1 362416..362814(-) (nin/comJ) [Bacillus subtilis strain KF24]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGACACTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985