Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QNH34_RS07970 Genome accession   NZ_CP126096
Coordinates   1571383..1572285 (+) Length   300 a.a.
NCBI ID   WP_041090524.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G6S2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1566383..1577285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS07950 (QNH34_07950) - 1567052..1568785 (+) 1734 WP_163116157.1 glycosyltransferase -
  QNH34_RS07955 (QNH34_07955) - 1568782..1569057 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  QNH34_RS07960 (QNH34_07960) sucC 1569234..1570394 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  QNH34_RS07965 (QNH34_07965) sucD 1570417..1571319 (+) 903 WP_283933395.1 succinate--CoA ligase subunit alpha -
  QNH34_RS07970 (QNH34_07970) dprA 1571383..1572285 (+) 903 WP_041090524.1 DNA-processing protein DprA Machinery gene
  QNH34_RS07975 (QNH34_07975) topA 1572480..1574555 (+) 2076 WP_268362967.1 type I DNA topoisomerase -
  QNH34_RS07980 (QNH34_07980) trmFO 1574626..1575930 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QNH34_RS07985 (QNH34_07985) xerC 1575993..1576910 (+) 918 WP_039166693.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34059.40 Da        Isoelectric Point: 8.2776

>NTDB_id=835640 QNH34_RS07970 WP_041090524.1 1571383..1572285(+) (dprA) [Bacillus altitudinis strain G6S2]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=835640 QNH34_RS07970 WP_041090524.1 1571383..1572285(+) (dprA) [Bacillus altitudinis strain G6S2]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38