Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH28_RS29515 Genome accession   NZ_CP126095
Coordinates   6682158..6682664 (-) Length   168 a.a.
NCBI ID   WP_036677780.1    Uniprot ID   A0AA95LKX1
Organism   Paenibacillus sp. G2S3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6677158..6687664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH28_RS29500 (QNH28_29500) opp4A 6677441..6679171 (-) 1731 WP_283909653.1 oligopeptide ABC transporter substrate-binding protein -
  QNH28_RS29505 (QNH28_29505) - 6679363..6681315 (-) 1953 WP_283909654.1 DNA mismatch repair protein MutS -
  QNH28_RS29510 (QNH28_29510) rpsR 6681864..6682136 (-) 273 WP_036651767.1 30S ribosomal protein S18 -
  QNH28_RS29515 (QNH28_29515) ssbA 6682158..6682664 (-) 507 WP_036677780.1 single-stranded DNA-binding protein Machinery gene
  QNH28_RS29520 (QNH28_29520) rpsF 6682713..6682997 (-) 285 WP_036677776.1 30S ribosomal protein S6 -
  QNH28_RS29525 (QNH28_29525) - 6683213..6683410 (+) 198 WP_042131720.1 YjzC family protein -
  QNH28_RS29535 (QNH28_29535) - 6683916..6684128 (-) 213 WP_076120612.1 DUF951 domain-containing protein -
  QNH28_RS29540 (QNH28_29540) - 6684128..6685156 (-) 1029 WP_283909655.1 mechanosensitive ion channel family protein -
  QNH28_RS29545 (QNH28_29545) - 6685172..6685423 (-) 252 WP_283909656.1 DUF3343 domain-containing protein -
  QNH28_RS29550 (QNH28_29550) yyaC 6685542..6686147 (+) 606 WP_283909657.1 spore protease YyaC -
  QNH28_RS29555 (QNH28_29555) - 6686122..6686622 (-) 501 WP_283909658.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18518.32 Da        Isoelectric Point: 4.8280

>NTDB_id=835612 QNH28_RS29515 WP_036677780.1 6682158..6682664(-) (ssbA) [Paenibacillus sp. G2S3]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSREGGNTSSGASSMPEEPAYGGGGNAGRGNNNNNFSRNNNTQDPFSGDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=835612 QNH28_RS29515 WP_036677780.1 6682158..6682664(-) (ssbA) [Paenibacillus sp. G2S3]
TTGTTGAACCGTATCATTTTGATCGGACGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAATTTACGCTAGCCGTAGATCGTAACTTTACGGGCCAGAACGGTGAACGTGAGGCAGACTTCATCCCGGTTGTAACCT
GGAGACAGCTAGCAGAAACCTGTGCCAATTACTTGCGCAAAGGTCGTCTGACAGCAGTGGAAGGACGCATCCAAGTGCGG
AATTATGAGAATAACGAAGGCAAACGTGTATACGTAACTGAAGTTATTGCTGATAATGTTCGTTTCCTGGAATCTTCACA
GAGCCGTGAAGGTGGAAATACTTCAAGTGGTGCAAGTAGTATGCCTGAAGAGCCAGCATATGGTGGCGGTGGTAACGCTG
GACGCGGAAATAACAACAATAATTTCTCGCGTAACAACAATACTCAAGATCCTTTTTCGGGCGATGGTAAACCGATTGAT
ATATCGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

49.708

100

0.506