Detailed information NTG0083558

Bioinformatically predicted

Overview

• Name: comR
• Type: Regulator
• Locus tag: R8570_RS09470
• Genome accession: NZ_AP026932
• Coordinates: 1866533..1867432 (-)
• Length: 299 a.a.
• NCBI ID: WP_000904863.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900701549
• Function: activate transcription of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1861533..1872432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8570_RS09450 (PC1528_18770)	rsmA	1862287..1863159 (-)	873	WP_050263712.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
R8570_RS09455	-	1863290..1863598 (-)	309	Protein_1850	hypothetical protein	-
R8570_RS09460 (PC1528_18790)	-	1863591..1864232 (-)	642	WP_000565531.1	ABC transporter ATP-binding protein	-
R8570_RS09465 (PC1528_18800)	-	1864234..1866264 (-)	2031	WP_050100261.1	bacteriocin-associated integral membrane family protein	-
R8570_RS09470 (PC1528_18810)	comR	1866533..1867432 (-)	900	WP_000904863.1	helix-turn-helix transcriptional regulator	Regulator
R8570_RS09475 (PC1528_18820)	rnmV	1867504..1868064 (-)	561	WP_000660012.1	ribonuclease M5	-
R8570_RS09480 (PC1528_18830)	-	1868064..1868837 (-)	774	WP_000575633.1	TatD family hydrolase	-
R8570_RS09485 (PC1528_18840)	-	1869142..1869861 (-)	720	Protein_1856	DUF1542 domain-containing protein	-
R8570_RS09490 (PC1528_18850)	rpmH	1870070..1870204 (-)	135	WP_000831905.1	50S ribosomal protein L34	-
R8570_RS09495 (PC1528_18860)	-	1870349..1871563 (-)	1215	WP_000666469.1	pyridoxal phosphate-dependent aminotransferase	-
R8570_RS09500 (PC1528_18870)	-	1871719..1872012 (-)	294	WP_000977365.1	hypothetical protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 35313.07 Da
• Isoelectric Point: 4.8952

>NTDB_id=83558 R8570_RS09470 WP_000904863.1 1866533..1867432(-) (comR) [Streptococcus pneumoniae strain PZ900701549]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMSQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide

• Length: 900 bp

>NTDB_id=83558 R8570_RS09470 WP_000904863.1 1866533..1867432(-) (comR) [Streptococcus pneumoniae strain PZ900701549]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGTCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

• ComR tetratricopeptide (ComR_TPR) (70-291)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR	Streptococcus mutans UA159	37.755	98.328	0.371
comR	Streptococcus suis P1/7	38.144	97.324	0.371
comR	Streptococcus suis 05ZYH33	38.144	97.324	0.371