Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH18_RS13410 Genome accession   NZ_CP126091
Coordinates   2641123..2642187 (-) Length   354 a.a.
NCBI ID   WP_079289188.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2636123..2647187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS13365 (QNH18_13365) tapA 2636618..2637346 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  QNH18_RS13370 (QNH18_13370) - 2637623..2637943 (+) 321 WP_101561076.1 YqzG/YhdC family protein -
  QNH18_RS13375 (QNH18_13375) - 2637973..2638155 (-) 183 WP_020452171.1 YqzE family protein -
  QNH18_RS13380 (QNH18_13380) comGG 2638244..2638609 (-) 366 WP_020452172.1 competence type IV pilus minor pilin ComGG -
  QNH18_RS13385 (QNH18_13385) comGF 2638621..2639109 (-) 489 WP_223254778.1 competence type IV pilus minor pilin ComGF -
  QNH18_RS13390 (QNH18_13390) comGE 2639018..2639365 (-) 348 WP_101561077.1 competence type IV pilus minor pilin ComGE -
  QNH18_RS13395 (QNH18_13395) comGD 2639349..2639786 (-) 438 WP_020452175.1 competence type IV pilus minor pilin ComGD -
  QNH18_RS13400 (QNH18_13400) comGC 2639792..2640085 (-) 294 WP_020452176.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH18_RS13405 (QNH18_13405) comGB 2640099..2641133 (-) 1035 WP_023855193.1 competence type IV pilus assembly protein ComGB Machinery gene
  QNH18_RS13410 (QNH18_13410) comGA 2641123..2642187 (-) 1065 WP_079289188.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH18_RS13415 (QNH18_13415) - 2642345..2643184 (-) 840 WP_020452179.1 STAS domain-containing protein -
  QNH18_RS13425 (QNH18_13425) - 2643426..2643803 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH18_RS13430 (QNH18_13430) - 2644015..2644260 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  QNH18_RS13435 (QNH18_13435) - 2644296..2644934 (-) 639 WP_020452181.1 MBL fold metallo-hydrolase -
  QNH18_RS13440 (QNH18_13440) - 2645090..2645263 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  QNH18_RS13445 (QNH18_13445) - 2645324..2645638 (-) 315 WP_020452182.1 MTH1187 family thiamine-binding protein -
  QNH18_RS13450 (QNH18_13450) - 2645654..2646763 (-) 1110 WP_101561078.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39880.41 Da        Isoelectric Point: 9.1063

>NTDB_id=835368 QNH18_RS13410 WP_079289188.1 2641123..2642187(-) (comGA) [Bacillus paralicheniformis strain CEW 1W]
MYTIESLSGRLIDEAYRMKATDIHIVPGEKEAVVRFRIDDELFQKERLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINRQPVHLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSVGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDNCSLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC
GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=835368 QNH18_RS13410 WP_079289188.1 2641123..2642187(-) (comGA) [Bacillus paralicheniformis strain CEW 1W]
TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGACAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTTCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGAAAGATTAACGAGAAATGAGTGCT
CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT
CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC
GCTAAGCGGCATTTTAAGCGAAATATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA
AGTAAACGAAAAAGCTGGCATGACTTATTCTGTGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT
GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC
AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAACTGCTCTTTATATTGCAGATTGTCGAGGC
CTGTGAGAAGAGCAAGCGTCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC
GGTGACATAAAAACAGAAACATTGAAAACGCTGATACAGAAGGGAATAGCACTCGGATATCTGCCGTCGAATACTTATGA
ACGCTGGATAGGCCATGAAGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

67.232

100

0.672