Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QNH18_RS13405 Genome accession   NZ_CP126091
Coordinates   2640099..2641133 (-) Length   344 a.a.
NCBI ID   WP_023855193.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2635099..2646133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS13355 (QNH18_13355) - 2635170..2635964 (-) 795 WP_020452167.1 TasA family protein -
  QNH18_RS13360 (QNH18_13360) - 2636037..2636621 (-) 585 WP_023855186.1 signal peptidase I -
  QNH18_RS13365 (QNH18_13365) tapA 2636618..2637346 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  QNH18_RS13370 (QNH18_13370) - 2637623..2637943 (+) 321 WP_101561076.1 YqzG/YhdC family protein -
  QNH18_RS13375 (QNH18_13375) - 2637973..2638155 (-) 183 WP_020452171.1 YqzE family protein -
  QNH18_RS13380 (QNH18_13380) comGG 2638244..2638609 (-) 366 WP_020452172.1 competence type IV pilus minor pilin ComGG -
  QNH18_RS13385 (QNH18_13385) comGF 2638621..2639109 (-) 489 WP_223254778.1 competence type IV pilus minor pilin ComGF -
  QNH18_RS13390 (QNH18_13390) comGE 2639018..2639365 (-) 348 WP_101561077.1 competence type IV pilus minor pilin ComGE -
  QNH18_RS13395 (QNH18_13395) comGD 2639349..2639786 (-) 438 WP_020452175.1 competence type IV pilus minor pilin ComGD -
  QNH18_RS13400 (QNH18_13400) comGC 2639792..2640085 (-) 294 WP_020452176.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH18_RS13405 (QNH18_13405) comGB 2640099..2641133 (-) 1035 WP_023855193.1 competence type IV pilus assembly protein ComGB Machinery gene
  QNH18_RS13410 (QNH18_13410) comGA 2641123..2642187 (-) 1065 WP_079289188.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH18_RS13415 (QNH18_13415) - 2642345..2643184 (-) 840 WP_020452179.1 STAS domain-containing protein -
  QNH18_RS13425 (QNH18_13425) - 2643426..2643803 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH18_RS13430 (QNH18_13430) - 2644015..2644260 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  QNH18_RS13435 (QNH18_13435) - 2644296..2644934 (-) 639 WP_020452181.1 MBL fold metallo-hydrolase -
  QNH18_RS13440 (QNH18_13440) - 2645090..2645263 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  QNH18_RS13445 (QNH18_13445) - 2645324..2645638 (-) 315 WP_020452182.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39837.14 Da        Isoelectric Point: 9.6575

>NTDB_id=835367 QNH18_RS13405 WP_023855193.1 2640099..2641133(-) (comGB) [Bacillus paralicheniformis strain CEW 1W]
MKIKMKWPVREQADILKKLGDMMKSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGRPVFQVLEMISFHKDAVTIVYF
AEQHGNLPYAFRQSGELLHRKIAQTEKLKKAARYPLFLVLTVCVIISIMKSAIIPQFSAIYESMNVETSFTTTLIFSVFD
HFYLFIAGMMLIAAALSLYYLCSFRHKPPEDKMTFLIRIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LSFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=835367 QNH18_RS13405 WP_023855193.1 2640099..2641133(-) (comGB) [Bacillus paralicheniformis strain CEW 1W]
ATGAAGATTAAAATGAAGTGGCCCGTCCGGGAACAGGCGGACATTCTGAAAAAACTCGGAGACATGATGAAGAGCGGATA
TACGATTTTGGATGCTTTAAGTATGCTGAAACTGCAATTGAATGAAAGGCGAAGAGCAGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGCGACCTGTGTTTCAAGTGCTTGAAATGATTTCATTTCATAAGGATGCTGTTACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATATGCCTTTCGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAACCGAAAA
ACTAAAGAAAGCCGCCAGATATCCCTTGTTTTTAGTTTTAACGGTCTGCGTCATTATCTCTATTATGAAATCGGCAATCA
TCCCGCAATTTTCCGCGATCTATGAATCAATGAACGTTGAAACGTCTTTTACAACGACCCTCATCTTTTCGGTTTTTGAT
CATTTTTATCTTTTTATCGCAGGAATGATGTTGATTGCCGCCGCTTTATCCCTCTATTATCTGTGTTCATTTCGCCATAA
ACCTCCAGAAGACAAAATGACCTTTCTCATTAGAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGTTATTTTT
TATCGCTCCAATTGAGCAATCTTTTGCAAGCTGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTATCATTTCATAAAAATGAAGCGAAGCGCCTGATCGAGCGGCTGAAACAAGGGGAGAGTCTGGAGCAGATGCTGGCCGG
GCATCCGTTTTATGAAAATGATCTGGCGAAGGCTGTTGCTCACGGCCAATTAAACGGACACTTATACAGAGAGCTGTATT
CATACAGTCAATTTTTGATTGAACGGCTTGAACGGAAAGCAGAAAAATGGACAGGTTTGATCCAGCCATTGATTTACGGG
CTAACAGCGGCGATGATATTAATTCTTTATTTGTCTATGCTTTTGCCAATGTATCAAATGATGAACCAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

57.276

93.895

0.538