Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH18_RS02050 Genome accession   NZ_CP126091
Coordinates   381107..381553 (-) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 376107..386553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS02025 (QNH18_02025) - 376714..377589 (-) 876 WP_059230708.1 transporter substrate-binding domain-containing protein -
  QNH18_RS02030 (QNH18_02030) - 377773..378324 (+) 552 WP_039073173.1 NAD(P)H-dependent oxidoreductase -
  QNH18_RS02035 (QNH18_02035) - 378420..379145 (+) 726 WP_020450093.1 AAA family ATPase -
  QNH18_RS02040 (QNH18_02040) - 379215..380651 (+) 1437 WP_059230706.1 family 1 glycosylhydrolase -
  QNH18_RS02045 (QNH18_02045) nin/comJ 380691..381089 (-) 399 WP_059230704.1 competence protein ComJ Regulator
  QNH18_RS02050 (QNH18_02050) nucA/comI 381107..381553 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNH18_RS02055 (QNH18_02055) - 381856..382026 (+) 171 WP_023855671.1 hypothetical protein -
  QNH18_RS02060 (QNH18_02060) - 382032..382835 (+) 804 WP_283931552.1 protein kinase -
  QNH18_RS02065 (QNH18_02065) - 383241..383981 (-) 741 WP_268509504.1 LXG domain-containing protein -
  QNH18_RS02070 (QNH18_02070) - 384386..386440 (+) 2055 WP_095292858.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=835332 QNH18_RS02050 WP_020450096.1 381107..381553(-) (nucA/comI) [Bacillus paralicheniformis strain CEW 1W]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=835332 QNH18_RS02050 WP_020450096.1 381107..381553(-) (nucA/comI) [Bacillus paralicheniformis strain CEW 1W]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635