Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QNH21_RS14795 Genome accession   NZ_CP126090
Coordinates   2886224..2886865 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain CEW AP102     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2881224..2891865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH21_RS14760 (QNH21_14760) - 2882351..2882782 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  QNH21_RS14765 (QNH21_14765) - 2882782..2883123 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  QNH21_RS14770 (QNH21_14770) - 2883116..2884594 (+) 1479 WP_044332445.1 Na+/H+ antiporter subunit D -
  QNH21_RS14775 (QNH21_14775) - 2884601..2885080 (+) 480 WP_024423318.1 Na+/H+ antiporter subunit E -
  QNH21_RS14780 (QNH21_14780) - 2885080..2885361 (+) 282 WP_024423319.1 Na(+)/H(+) antiporter subunit F1 -
  QNH21_RS14785 (QNH21_14785) mnhG 2885345..2885719 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  QNH21_RS14790 (QNH21_14790) - 2885811..2886200 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  QNH21_RS14795 (QNH21_14795) comA 2886224..2886865 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  QNH21_RS14800 (QNH21_14800) - 2886946..2887467 (-) 522 Protein_2853 sensor histidine kinase -
  QNH21_RS14805 (QNH21_14805) - 2887436..2887747 (-) 312 WP_283907330.1 PDZ domain-containing protein -
  QNH21_RS14810 (QNH21_14810) comX 2887801..2887971 (-) 171 WP_073207246.1 competence pheromone ComX -
  QNH21_RS14815 (QNH21_14815) - 2887968..2888882 (-) 915 WP_024423324.1 polyprenyl synthetase family protein -
  QNH21_RS14820 (QNH21_14820) degQ 2889034..2889174 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  QNH21_RS14825 (QNH21_14825) - 2889680..2890036 (+) 357 WP_151039930.1 inner spore coat protein -
  QNH21_RS14830 (QNH21_14830) - 2890072..2891298 (-) 1227 WP_024423326.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=835311 QNH21_RS14795 WP_024423322.1 2886224..2886865(-) (comA) [Bacillus safensis strain CEW AP102]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=835311 QNH21_RS14795 WP_024423322.1 2886224..2886865(-) (comA) [Bacillus safensis strain CEW AP102]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723