Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QNH32_RS19030 Genome accession   NZ_CP126088
Coordinates   3631559..3631966 (-) Length   135 a.a.
NCBI ID   WP_225001980.1    Uniprot ID   -
Organism   Priestia flexa strain CCW CN82     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3626559..3636966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH32_RS18990 (QNH32_18990) csrA 3626607..3626846 (-) 240 WP_283880395.1 carbon storage regulator CsrA -
  QNH32_RS18995 (QNH32_18995) fliW 3626860..3627288 (-) 429 WP_076512305.1 flagellar assembly protein FliW -
  QNH32_RS19000 (QNH32_19000) - 3627292..3627708 (-) 417 WP_119542655.1 DUF6470 family protein -
  QNH32_RS19005 (QNH32_19005) flgL 3627753..3628634 (-) 882 WP_225001983.1 flagellar hook-associated protein FlgL -
  QNH32_RS19010 (QNH32_19010) flgK 3628637..3630151 (-) 1515 WP_283880396.1 flagellar hook-associated protein FlgK -
  QNH32_RS19015 (QNH32_19015) - 3630172..3630612 (-) 441 WP_025909627.1 flagellar protein FlgN -
  QNH32_RS19020 (QNH32_19020) flgM 3630628..3630885 (-) 258 WP_138116405.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH32_RS19025 (QNH32_19025) - 3631100..3631501 (-) 402 WP_283880397.1 TIGR03826 family flagellar region protein -
  QNH32_RS19030 (QNH32_19030) comFC 3631559..3631966 (-) 408 WP_225001980.1 hypothetical protein Machinery gene
  QNH32_RS19035 (QNH32_19035) comFA 3632251..3633744 (-) 1494 WP_283880398.1 DEAD/DEAH box helicase Machinery gene
  QNH32_RS19040 (QNH32_19040) - 3633830..3634675 (-) 846 WP_025909622.1 DegV family protein -
  QNH32_RS19045 (QNH32_19045) - 3634792..3635229 (-) 438 WP_283880399.1 YaaR family protein -
  QNH32_RS19050 (QNH32_19050) - 3635311..3636132 (-) 822 WP_206782903.1 flagellin -
  QNH32_RS19055 (QNH32_19055) - 3636149..3636574 (-) 426 WP_235932360.1 flagellar export chaperone FliS -
  QNH32_RS19060 (QNH32_19060) - 3636622..3636927 (-) 306 WP_025909618.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15738.13 Da        Isoelectric Point: 7.3524

>NTDB_id=835203 QNH32_RS19030 WP_225001980.1 3631559..3631966(-) (comFC) [Priestia flexa strain CCW CN82]
MFKYRGDYELHKIFTDDFAQLYKVYSPENPVLVPIPLSKERMYERGFNQAEALASLLPAEVAYPLTRKHTEKQAKKTREE
RLQNHRVFELVDPELVTKRNVILIDDLYTTGVTLHEAALCLKDVAAAIYSFTIYR

Nucleotide


Download         Length: 408 bp        

>NTDB_id=835203 QNH32_RS19030 WP_225001980.1 3631559..3631966(-) (comFC) [Priestia flexa strain CCW CN82]
TTGTTTAAATACCGAGGTGACTACGAACTTCATAAAATATTTACTGACGATTTCGCTCAGCTTTATAAGGTATATAGTCC
TGAGAACCCCGTACTGGTTCCCATCCCTTTAAGCAAGGAGCGAATGTATGAGCGTGGGTTTAATCAAGCGGAAGCGTTGG
CATCTTTACTCCCGGCAGAGGTAGCTTACCCTCTTACTCGTAAGCATACGGAGAAACAAGCGAAGAAAACGAGAGAAGAA
AGGCTACAAAACCATAGGGTGTTCGAGCTTGTGGATCCAGAGCTGGTTACAAAAAGAAACGTCATTTTAATCGATGATTT
GTACACAACGGGCGTTACGTTACACGAAGCAGCGCTTTGTCTAAAAGATGTGGCAGCAGCAATCTATTCTTTTACAATTT
ACCGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

51.095

100

0.519
  comFC Latilactobacillus sakei subsp. sakei 23K

38.028

100

0.4
  comFC Lactococcus lactis subsp. cremoris KW2

37.5

100

0.378