Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   R8570_RS02310 Genome accession   NZ_AP026932
Coordinates   467606..468655 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701549     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 462606..473655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8570_RS02280 - 463441..464074 (+) 634 Protein_447 DJ-1/PfpI family protein -
  R8570_RS02285 (PC1528_04550) dnaJ 464244..465380 (+) 1137 WP_001066288.1 molecular chaperone DnaJ -
  R8570_RS02290 (PC1528_04560) - 465702..465941 (-) 240 WP_001813906.1 hypothetical protein -
  R8570_RS02295 (PC1528_04570) - 466103..466390 (-) 288 WP_000777760.1 hypothetical protein -
  R8570_RS02300 (PC1528_04580) - 466400..466810 (-) 411 WP_001278301.1 HIT family protein -
  R8570_RS02305 (PC1528_04590) pptA 466878..467609 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  R8570_RS02310 (PC1528_04600) pptB 467606..468655 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  R8570_RS02315 (PC1528_04610) - 468823..469152 (-) 330 WP_000132572.1 hypothetical protein -
  R8570_RS02320 (PC1528_04620) - 469429..469767 (+) 339 WP_000682132.1 LytTR family DNA-binding domain-containing protein -
  R8570_RS02325 (PC1528_04630) comE/blpR 469772..470509 (+) 738 WP_001219146.1 response regulator transcription factor Regulator
  R8570_RS02330 (PC1528_04640) - 470523..471863 (+) 1341 WP_001099895.1 sensor histidine kinase -
  R8570_RS02335 (PC1528_04650) blpC 471908..472063 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  R8570_RS02340 (PC1528_04660) - 472120..473481 (-) 1362 WP_001069060.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=83491 R8570_RS02310 WP_000653771.1 467606..468655(+) (pptB) [Streptococcus pneumoniae strain PZ900701549]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=83491 R8570_RS02310 WP_000653771.1 467606..468655(+) (pptB) [Streptococcus pneumoniae strain PZ900701549]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTTTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment