Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ZMTM_RS01080 Genome accession   NZ_AP024110
Coordinates   215374..216720 (-) Length   448 a.a.
NCBI ID   WP_221764514.1    Uniprot ID   A0A8D5FY93
Organism   Methyloradius palustris strain Zm11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 210374..221720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ZMTM_RS01055 (ZMTM_01990) - 210756..211991 (+) 1236 WP_221764511.1 dicarboxylate/amino acid:cation symporter -
  ZMTM_RS01060 (ZMTM_02000) - 212040..212564 (+) 525 WP_225907052.1 GNAT family N-acetyltransferase -
  ZMTM_RS01065 (ZMTM_02010) - 212779..213750 (+) 972 WP_221764512.1 DMT family transporter -
  ZMTM_RS01070 (ZMTM_02020) ampD 213743..214282 (-) 540 WP_221764513.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ZMTM_RS01075 (ZMTM_02030) - 214357..215358 (+) 1002 WP_221765522.1 sodium:calcium antiporter -
  ZMTM_RS01080 (ZMTM_02040) pilR 215374..216720 (-) 1347 WP_221764514.1 sigma-54 dependent transcriptional regulator Regulator
  ZMTM_RS01085 (ZMTM_02050) - 216710..218332 (-) 1623 WP_225907053.1 PAS domain-containing sensor histidine kinase -
  ZMTM_RS01090 (ZMTM_02060) - 218329..218547 (-) 219 WP_221764515.1 PP0621 family protein -
  ZMTM_RS01095 (ZMTM_02070) - 218769..219359 (+) 591 WP_221764516.1 RNA polymerase sigma factor -
  ZMTM_RS01100 (ZMTM_02080) - 219356..219742 (+) 387 WP_221764517.1 DUF3619 family protein -
  ZMTM_RS01105 (ZMTM_02090) - 219796..220167 (+) 372 WP_404804678.1 DUF3106 domain-containing protein -
  ZMTM_RS01110 - 220206..220637 (+) 432 WP_221764519.1 RDD family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49088.42 Da        Isoelectric Point: 6.3498

>NTDB_id=83482 ZMTM_RS01080 WP_221764514.1 215374..216720(-) (pilR) [Methyloradius palustris strain Zm11]
MTIKPSCLVVDDETDLRELIVLTLQRMGIHADSASDLDDAKYLLKRNSYALCLTDMRLPDGNGLDLVRHINQHYAGLPVA
VITAYGSADNAVSALKAGAFDYLTKPISLQQLRPLVQAALRLSKSEPSNSSELTLLGNSAKIQHIRTTIEKLSRSQAPVH
IKGAVGTGKALAAELIHMNSTREHAPFISLNCSAVDTDAIEALLFGCKKESEQEKTGLFHEANGGTLFIDEVTEIPLVTQ
VKLLRAIQDKKITKLGSSDEDTIDVRLITATSQNMQAAMDNGLFRQDLYYRLNVIELIMPALTEIAEDIPLIASHLLEKR
CKALNVIIPSFDSQALQALSQYKFPGNVRELENILERALTLCTHNKISVSDLSLPKPEKSKSTGLEANPDGLPDIALPDY
LETIEKQAIINALEKTGQNKTAAAKLLGVSFRTLRYRLSKLGLSKDQD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=83482 ZMTM_RS01080 WP_221764514.1 215374..216720(-) (pilR) [Methyloradius palustris strain Zm11]
ATGACCATTAAACCCAGCTGCCTAGTTGTTGACGACGAAACCGACTTGCGTGAGCTGATTGTGCTCACATTGCAACGCAT
GGGTATTCATGCTGATAGCGCGAGTGATCTGGACGATGCCAAATATCTGCTGAAGAGAAATAGCTATGCACTCTGTTTAA
CCGATATGCGGCTACCAGATGGCAATGGGCTTGATCTCGTACGTCATATAAACCAGCATTATGCTGGACTACCAGTTGCC
GTCATTACCGCTTACGGCAGTGCTGACAATGCAGTATCTGCACTAAAAGCGGGTGCATTTGATTACCTGACCAAACCAAT
CTCGCTTCAGCAATTACGGCCACTGGTGCAAGCGGCATTGCGCCTAAGCAAGTCTGAACCTAGCAACAGTAGCGAACTCA
CATTGCTGGGAAATTCAGCGAAAATCCAGCATATTCGCACCACCATAGAAAAACTGAGTCGTAGCCAGGCCCCTGTCCAT
ATCAAGGGTGCTGTAGGTACTGGCAAGGCACTCGCTGCTGAACTCATACACATGAATAGCACACGTGAACATGCGCCATT
TATCAGCCTTAATTGCAGTGCTGTTGATACAGATGCCATAGAAGCGCTACTTTTTGGCTGCAAGAAAGAGTCTGAGCAAG
AAAAAACTGGGCTATTCCATGAAGCCAACGGCGGCACACTATTTATCGATGAAGTCACGGAGATACCGCTAGTCACGCAA
GTTAAATTGTTACGCGCGATACAGGACAAGAAAATCACTAAACTTGGTAGCAGTGATGAAGACACCATCGATGTGCGACT
GATTACGGCGACTAGCCAAAATATGCAGGCAGCCATGGATAATGGTTTATTCAGGCAAGATTTATATTATCGACTCAATG
TGATTGAGCTGATAATGCCTGCCTTAACTGAAATCGCTGAAGACATCCCTTTGATTGCGAGCCATCTTCTGGAAAAACGC
TGTAAAGCGCTAAATGTAATCATTCCAAGCTTTGACTCTCAAGCATTACAAGCACTGAGCCAGTATAAATTCCCAGGGAA
TGTGCGTGAACTTGAGAACATTCTGGAACGTGCATTAACGCTTTGTACCCACAATAAAATCAGTGTGAGCGATCTATCTC
TACCCAAACCAGAAAAATCAAAAAGCACAGGCTTAGAGGCCAATCCAGATGGCCTGCCTGATATTGCCCTGCCCGATTAT
CTTGAAACCATAGAAAAGCAGGCGATTATTAACGCACTGGAAAAAACTGGTCAAAATAAAACGGCTGCCGCAAAACTATT
GGGCGTGAGTTTTAGGACATTGCGTTACCGTTTATCTAAGCTTGGCCTGAGTAAAGACCAAGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-297)

Bacterial regulatory protein, Fis family (HTH_8)

(401-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

48.879

99.554

0.487
  pilR Acinetobacter baumannii strain A118

45.064

100

0.469

Multiple sequence alignment