Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JLC71_RS01065 Genome accession   NZ_AP024094
Coordinates   204760..205560 (+) Length   266 a.a.
NCBI ID   WP_200916849.1    Uniprot ID   A0A7I8E8X7
Organism   Jeongeupia sp. HS-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 199760..210560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLC71_RS01040 (JHS3_02050) folE2 200433..201227 (+) 795 WP_200916844.1 GTP cyclohydrolase FolE2 -
  JLC71_RS01045 (JHS3_02060) - 201280..202575 (-) 1296 WP_200916845.1 inverse autotransporter beta domain-containing protein -
  JLC71_RS01050 (JHS3_02070) - 202717..202926 (+) 210 WP_200916846.1 hypothetical protein -
  JLC71_RS01055 (JHS3_02080) pgeF 202976..203722 (-) 747 WP_200916847.1 peptidoglycan editing factor PgeF -
  JLC71_RS01060 (JHS3_02090) rluD 203709..204761 (-) 1053 WP_200916848.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JLC71_RS01065 (JHS3_02100) comL 204760..205560 (+) 801 WP_200916849.1 outer membrane protein assembly factor BamD Machinery gene
  JLC71_RS01090 (JHS3_02110) glpD 206231..207802 (+) 1572 WP_200916850.1 glycerol-3-phosphate dehydrogenase -
  JLC71_RS01095 (JHS3_02120) glpK 207905..209410 (+) 1506 WP_200916851.1 glycerol kinase GlpK -
  JLC71_RS01100 (JHS3_02130) - 209534..210451 (+) 918 WP_200916852.1 sugar kinase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30168.34 Da        Isoelectric Point: 7.3130

>NTDB_id=83451 JLC71_RS01065 WP_200916849.1 204760..205560(+) (comL) [Jeongeupia sp. HS-3]
MGKILPRFLACASVVVLLAGCASTQVDDDETKGWSAEKLYGAAKAEQTDRNFEKSTKLLEKLEARFPYGRYAQQAQLDEA
YNHYKNQEPLLAQAAIDRFIKSNPVHPSMDYALYLKGLVSFNEVQGFLSAISKQDMSERDPKAAKESFEAFKELIQRFPE
SKYAADSQVRMAYLLGALASYELHVGKYYYKRGAYLAAANRGKHLIETYSNTKQVEAGLAMMVISYDKLGLTELRDDTKR
ILLKNYPDTETLTKGFFEDPAWWTPF

Nucleotide


Download         Length: 801 bp        

>NTDB_id=83451 JLC71_RS01065 WP_200916849.1 204760..205560(+) (comL) [Jeongeupia sp. HS-3]
ATGGGCAAGATTCTACCGCGATTCCTCGCGTGCGCTTCGGTCGTAGTGCTACTCGCCGGCTGCGCCTCGACTCAGGTTGA
CGATGACGAAACCAAAGGCTGGTCAGCCGAGAAGCTGTATGGCGCAGCGAAGGCCGAGCAGACCGATCGCAACTTCGAGA
AATCAACCAAACTGCTGGAAAAGCTTGAGGCTCGCTTTCCTTATGGCCGTTACGCGCAGCAAGCCCAGCTTGACGAGGCG
TACAACCATTACAAGAACCAAGAGCCCTTGCTGGCGCAAGCCGCGATTGATCGCTTTATCAAGAGCAATCCGGTTCACCC
GAGCATGGACTACGCGCTGTATTTGAAGGGGCTGGTCAGCTTCAATGAAGTACAGGGCTTCCTGTCGGCGATTTCCAAGC
AGGATATGTCCGAACGTGATCCGAAGGCCGCCAAGGAATCGTTCGAGGCGTTCAAGGAACTGATTCAGCGCTTTCCAGAA
AGCAAGTATGCTGCCGACTCGCAAGTGCGTATGGCTTATCTGCTTGGCGCACTGGCAAGTTACGAGCTGCACGTTGGCAA
GTACTATTACAAGCGCGGCGCCTATCTGGCCGCGGCCAATCGTGGCAAACACCTGATCGAAACCTATTCGAACACCAAGC
AGGTGGAAGCCGGTTTGGCGATGATGGTGATCAGTTATGACAAGCTCGGTTTGACCGAGCTGCGTGACGACACCAAGCGC
ATCCTGTTGAAGAACTATCCGGATACCGAGACCCTGACAAAGGGCTTCTTTGAAGACCCTGCATGGTGGACGCCGTTCTG
A

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(36-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8E8X7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.669

98.872

0.481
  comL Neisseria gonorrhoeae MS11

47.909

98.872

0.474

Multiple sequence alignment