Detailed information NTG0834434

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QM175_RS04505
• Genome accession: NZ_CP126058
• Coordinates: 962879..963679 (-)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae subsp. pneumoniae strain CS00491
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 957879..968679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QM175_RS04485	dksA	958459..958914 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
QM175_RS04490	sfsA	959077..959793 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QM175_RS04495	thpR	959793..960329 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
QM175_RS04500	hrpB	960402..962831 (+)	2430	WP_032434212.1	ATP-dependent helicase HrpB	-
QM175_RS04505	pilD	962879..963679 (-)	801	WP_004213441.1	A24 family peptidase	Machinery gene
QM175_RS04510	-	963676..964422 (-)	747	WP_032434210.1	type II secretion system protein N	-
QM175_RS04515	-	964412..964897 (-)	486	WP_004145896.1	type II secretion system protein M	-
QM175_RS04520	gspL	964890..966083 (-)	1194	WP_032434208.1	type II secretion system protein GspL	-
QM175_RS04525	gspK	966070..967056 (-)	987	WP_077254116.1	type II secretion system minor pseudopilin GspK	-
QM175_RS04530	gspJ	967053..967649 (-)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
QM175_RS04535	gspI	967646..968011 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QM175_RS04540	gspH	968008..968523 (-)	516	WP_032414529.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=834434 QM175_RS04505 WP_004213441.1 962879..963679(-) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain CS00491]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=834434 QM175_RS04505 WP_004213441.1 962879..963679(-) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain CS00491]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425