Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNK10_RS12510 Genome accession   NZ_CP125982
Coordinates   2338119..2338454 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain ZKY05     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2333119..2343454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK10_RS12490 (QNK10_12500) gcvT 2333711..2334799 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  QNK10_RS12495 (QNK10_12505) hepAA 2335241..2336914 (+) 1674 WP_014480248.1 DEAD/DEAH box helicase -
  QNK10_RS12500 (QNK10_12510) yqhG 2336935..2337729 (+) 795 WP_264379318.1 YqhG family protein -
  QNK10_RS12505 (QNK10_12515) sinI 2337912..2338085 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  QNK10_RS12510 (QNK10_12520) sinR 2338119..2338454 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QNK10_RS12515 (QNK10_12525) tasA 2338547..2339332 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  QNK10_RS12520 (QNK10_12530) sipW 2339396..2339968 (-) 573 WP_003230181.1 signal peptidase I SipW -
  QNK10_RS12525 (QNK10_12535) tapA 2339952..2340713 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  QNK10_RS12530 (QNK10_12540) yqzG 2340985..2341311 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QNK10_RS12535 (QNK10_12545) spoIITA 2341353..2341532 (-) 180 WP_014480252.1 YqzE family protein -
  QNK10_RS12540 (QNK10_12550) comGG 2341603..2341977 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  QNK10_RS12545 (QNK10_12555) comGF 2341978..2342361 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  QNK10_RS12550 (QNK10_12560) comGE 2342387..2342734 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  QNK10_RS12555 (QNK10_12565) comGD 2342718..2343149 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  QNK10_RS12560 (QNK10_12570) comGC 2343139..2343435 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=833987 QNK10_RS12510 WP_003226345.1 2338119..2338454(+) (sinR) [Bacillus subtilis strain ZKY05]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=833987 QNK10_RS12510 WP_003226345.1 2338119..2338454(+) (sinR) [Bacillus subtilis strain ZKY05]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1