Detailed information NTG0083394

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VNTUMSATTG_RS16250
• Genome accession: NZ_AP024087
• Coordinates: 3554405..3555391 (-)
• Length: 328 a.a.
• NCBI ID: WP_004401303.1
• Uniprot ID: A0AAV2VJY7
• Organism: Vibrio nigripulchritudo strain TUMSAT-TG-2018
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3549405..3560391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNTUMSATTG_RS16235 (VNTUMSATTG_31720)	-	3550041..3550658 (-)	618	WP_022549552.1	DUF1449 family protein	-
VNTUMSATTG_RS16240 (VNTUMSATTG_31730)	mutS	3551096..3553627 (+)	2532	WP_200767482.1	DNA mismatch repair protein MutS	-
VNTUMSATTG_RS16245 (VNTUMSATTG_31740)	-	3553698..3554219 (-)	522	WP_022549550.1	hypothetical protein	-
VNTUMSATTG_RS16250 (VNTUMSATTG_31750)	rpoS	3554405..3555391 (-)	987	WP_004401303.1	RNA polymerase sigma factor RpoS	Regulator
VNTUMSATTG_RS16255 (VNTUMSATTG_31760)	nlpD	3555450..3556379 (-)	930	WP_004401304.1	murein hydrolase activator NlpD	-
VNTUMSATTG_RS16260 (VNTUMSATTG_31770)	-	3556389..3557015 (-)	627	WP_200766173.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VNTUMSATTG_RS16265 (VNTUMSATTG_31780)	surE	3557016..3557762 (-)	747	WP_200766174.1	5'/3'-nucleotidase SurE	-
VNTUMSATTG_RS16270 (VNTUMSATTG_31790)	truD	3557790..3558833 (-)	1044	WP_200766175.1	tRNA pseudouridine(13) synthase TruD	-
VNTUMSATTG_RS16275 (VNTUMSATTG_31800)	ispF	3558837..3559313 (-)	477	WP_004401308.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VNTUMSATTG_RS16280 (VNTUMSATTG_31810)	ispD	3559323..3560036 (-)	714	WP_200766176.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VNTUMSATTG_RS16285 (VNTUMSATTG_31820)	ftsB	3560045..3560329 (-)	285	WP_004401310.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37786.74 Da
• Isoelectric Point: 4.6196

>NTDB_id=83394 VNTUMSATTG_RS16250 WP_004401303.1 3554405..3555391(-) (rpoS) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MSISNAVTKVEEEFDYEAVGMEQTTREESTLTQEKQSEQKEEFEVSAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDVNNSD
PEVCTQDDDIKHSLIDWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=83394 VNTUMSATTG_RS16250 WP_004401303.1 3554405..3555391(-) (rpoS) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAAGAGTTTGATTACGAAGCGGTAGGTATGGAACAAACCACCAGGGA
AGAATCTACTCTCACTCAAGAAAAACAGTCTGAACAGAAAGAAGAATTTGAGGTAAGTGCAAAAAGTTTAGACGCCACTC
AACTGTATCTCGGAGAGATCGGTTTCTCACCTCTTCTCACAGCAGAAGAAGAAGTCCTGTATGCACGTCGCGCACTTCGA
GGAGACGAAGCTGCACGCAAACGCATGATCGAAAGTAACCTTCGTTTAGTTGTTAAAATCTCTCGCCGTTACGGTAACAG
AGGGCTGGCACTGCTCGATCTGATCGAAGAAGGTAACCTAGGGCTGATCCGTGCAGTTGAGAAATTTGATCCTGAAAGAG
GTTTCCGTTTTTCAACGTACGCAACATGGTGGATTCGTCAAACCATCGAACGTGCATTGATGAACCAAACTCGCACTATT
CGTTTGCCCATACACGTAGTGAAAGAGCTGAATATCTATTTAAGAACGGCTCGGGAGCTATCGCAAAAACTGGATCATGA
ACCAACGGCAGAAGAAATTGCTCAGCAACTTGATAAGCCCGTTGATGATGTCAGCAAAATGCTTCGTCTGAATGAAAGAG
TCAGTTCCGTGGACACCCCAATCGGTGGTGAAAGCGAGAAAGCGCTTCTTGATATCATTCCAGACGTCAACAACTCTGAT
CCTGAAGTCTGTACTCAAGACGATGACATCAAACATTCTCTGATCGATTGGCTGGATGATTTGAATCCCAAGCAGAAAGA
AGTACTTGCTCGCCGTTTTGGTCTTCTAGGATATGAACCTTCAACACTGGAAGAAGTAGGGCGTGAGATCAACTTAACTC
GTGAACGCGTACGTCAGATCCAAGTTGAAGGGCTTCGCCGTTTAAGAGAGATCTTAGTGAAGCAAGGTCTGAACATGGAA
TCGCTGTTTAATGTCGAAAACGATTAG

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.284	100	0.851