Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNK07_RS02350 Genome accession   NZ_CP125981
Coordinates   426451..426900 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain ZKY06     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 421451..431900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK07_RS02315 (QNK07_02320) yckA 421726..422406 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  QNK07_RS02320 (QNK07_02325) yckB 422416..423279 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  QNK07_RS02325 (QNK07_02330) - 423441..423633 (+) 193 Protein_415 hypothetical protein -
  QNK07_RS02330 (QNK07_02335) - 423669..423989 (+) 321 Protein_416 RDD family protein -
  QNK07_RS02335 (QNK07_02340) yckD 424071..424403 (+) 333 WP_015252849.1 YckD family protein -
  QNK07_RS02340 (QNK07_02345) bglC 424556..425989 (+) 1434 WP_032722901.1 6-phospho-beta-glucosidase -
  QNK07_RS02345 (QNK07_02350) nin/comJ 426026..426424 (-) 399 WP_032722902.1 DNA-entry nuclease inhibitor Regulator
  QNK07_RS02350 (QNK07_02355) nucA/comI 426451..426900 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  QNK07_RS02355 (QNK07_02360) tlpC 427068..428789 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  QNK07_RS02360 (QNK07_02365) hxlB 428900..429457 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  QNK07_RS02365 (QNK07_02370) hxlA 429463..430095 (-) 633 WP_032722903.1 3-hexulose-6-phosphate synthase -
  QNK07_RS02370 (QNK07_02375) hxlR 430328..430690 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=833877 QNK07_RS02350 WP_003234608.1 426451..426900(-) (nucA/comI) [Bacillus subtilis strain ZKY06]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=833877 QNK07_RS02350 WP_003234608.1 426451..426900(-) (nucA/comI) [Bacillus subtilis strain ZKY06]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98