Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | VNTUMSATTG_RS15985 | Genome accession | NZ_AP024087 |
| Coordinates | 3498579..3499193 (+) | Length | 204 a.a. |
| NCBI ID | WP_004397669.1 | Uniprot ID | A0AAV2VQY2 |
| Organism | Vibrio nigripulchritudo strain TUMSAT-TG-2018 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3493579..3504193
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNTUMSATTG_RS15965 (VNTUMSATTG_31260) | - | 3494072..3494794 (-) | 723 | WP_200766156.1 | general secretion pathway protein GspB | - |
| VNTUMSATTG_RS15970 (VNTUMSATTG_31270) | - | 3494787..3496394 (-) | 1608 | WP_200766157.1 | ExeA family protein | - |
| VNTUMSATTG_RS15975 (VNTUMSATTG_31280) | - | 3496478..3497689 (+) | 1212 | WP_200766158.1 | multifunctional CCA addition/repair protein | - |
| VNTUMSATTG_RS15980 (VNTUMSATTG_31290) | hpt | 3497791..3498324 (-) | 534 | WP_004397670.1 | hypoxanthine phosphoribosyltransferase | - |
| VNTUMSATTG_RS15985 (VNTUMSATTG_31300) | opaR | 3498579..3499193 (+) | 615 | WP_004397669.1 | TetR/AcrR family transcriptional regulator | Regulator |
| VNTUMSATTG_RS15990 (VNTUMSATTG_31310) | lpdA | 3499332..3500762 (-) | 1431 | WP_022589429.1 | dihydrolipoyl dehydrogenase | - |
| VNTUMSATTG_RS15995 (VNTUMSATTG_31320) | aceF | 3501008..3502612 (-) | 1605 | WP_022611947.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23439.59 Da Isoelectric Point: 5.0114
>NTDB_id=83386 VNTUMSATTG_RS15985 WP_004397669.1 3498579..3499193(+) (opaR) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MDTVKKRPRTRLSPQKRKEQLHDIAIEVFAKRGIGRGGHADIAEIAQVSVATVFNYFQTREDLVDEVLSQVEKQYALFIN
ESLKVDATAEENLTSLTQNIIKAALDGTHWMKVWFEWSTSTREEVWPLFLSSNEESQKRIEDMFLTAMERGEVCDEHKAE
DLAKLLHGICYSLYVQANRNPDPEYLEGLVGSFLGMLCIYKQDH
MDTVKKRPRTRLSPQKRKEQLHDIAIEVFAKRGIGRGGHADIAEIAQVSVATVFNYFQTREDLVDEVLSQVEKQYALFIN
ESLKVDATAEENLTSLTQNIIKAALDGTHWMKVWFEWSTSTREEVWPLFLSSNEESQKRIEDMFLTAMERGEVCDEHKAE
DLAKLLHGICYSLYVQANRNPDPEYLEGLVGSFLGMLCIYKQDH
Nucleotide
Download Length: 615 bp
>NTDB_id=83386 VNTUMSATTG_RS15985 WP_004397669.1 3498579..3499193(+) (opaR) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGGATACAGTAAAAAAACGTCCAAGAACAAGGCTATCTCCACAAAAGCGTAAAGAACAGCTTCACGATATTGCTATCGA
AGTGTTCGCAAAACGCGGCATCGGTCGCGGGGGTCACGCTGATATCGCAGAAATTGCACAGGTTTCTGTTGCAACCGTAT
TCAACTACTTCCAAACACGTGAAGACTTGGTTGATGAAGTACTGAGTCAGGTTGAAAAGCAATACGCGTTATTCATCAAT
GAAAGCTTGAAGGTTGACGCAACAGCTGAAGAAAACCTGACAAGCCTAACGCAAAACATCATCAAAGCGGCACTGGATGG
CACTCACTGGATGAAAGTCTGGTTTGAGTGGAGCACATCCACTCGTGAAGAAGTGTGGCCACTGTTCCTGTCTAGCAACG
AAGAGTCACAAAAGCGTATTGAAGACATGTTCCTGACAGCAATGGAGCGTGGTGAAGTATGTGACGAGCATAAAGCCGAA
GACTTAGCGAAACTGCTTCACGGTATCTGCTACTCATTGTACGTACAGGCAAACCGTAACCCGGATCCTGAGTACTTAGA
AGGTTTGGTTGGAAGCTTCCTTGGCATGCTTTGCATTTACAAGCAAGACCACTAA
ATGGATACAGTAAAAAAACGTCCAAGAACAAGGCTATCTCCACAAAAGCGTAAAGAACAGCTTCACGATATTGCTATCGA
AGTGTTCGCAAAACGCGGCATCGGTCGCGGGGGTCACGCTGATATCGCAGAAATTGCACAGGTTTCTGTTGCAACCGTAT
TCAACTACTTCCAAACACGTGAAGACTTGGTTGATGAAGTACTGAGTCAGGTTGAAAAGCAATACGCGTTATTCATCAAT
GAAAGCTTGAAGGTTGACGCAACAGCTGAAGAAAACCTGACAAGCCTAACGCAAAACATCATCAAAGCGGCACTGGATGG
CACTCACTGGATGAAAGTCTGGTTTGAGTGGAGCACATCCACTCGTGAAGAAGTGTGGCCACTGTTCCTGTCTAGCAACG
AAGAGTCACAAAAGCGTATTGAAGACATGTTCCTGACAGCAATGGAGCGTGGTGAAGTATGTGACGAGCATAAAGCCGAA
GACTTAGCGAAACTGCTTCACGGTATCTGCTACTCATTGTACGTACAGGCAAACCGTAACCCGGATCCTGAGTACTTAGA
AGGTTTGGTTGGAAGCTTCCTTGGCATGCTTTGCATTTACAAGCAAGACCACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
61.275 |
100 |
0.613 |
| hapR | Vibrio cholerae C6706 |
59.5 |
98.039 |
0.583 |
| hapR | Vibrio cholerae strain A1552 |
59.5 |
98.039 |
0.583 |