Detailed information NTG0083385

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VNTUMSATTG_RS13190
• Genome accession: NZ_AP024087
• Coordinates: 2864138..2865142 (-)
• Length: 334 a.a.
• NCBI ID: WP_200767468.1
• Uniprot ID: -
• Organism: Vibrio nigripulchritudo strain TUMSAT-TG-2018
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2859138..2870142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNTUMSATTG_RS13165 (VNTUMSATTG_25730)	-	2859557..2860447 (+)	891	WP_022550018.1	carbohydrate ABC transporter permease	-
VNTUMSATTG_RS13170 (VNTUMSATTG_25740)	-	2860449..2861261 (+)	813	WP_004399400.1	carbohydrate ABC transporter permease	-
VNTUMSATTG_RS13175 (VNTUMSATTG_25750)	-	2861272..2862303 (+)	1032	WP_200765871.1	NAD(P)-dependent oxidoreductase	-
VNTUMSATTG_RS13180 (VNTUMSATTG_25760)	-	2862321..2863322 (+)	1002	WP_200765872.1	ABC transporter ATP-binding protein	-
VNTUMSATTG_RS13185 (VNTUMSATTG_25770)	-	2863332..2864123 (+)	792	WP_200765873.1	ThuA domain-containing protein	-
VNTUMSATTG_RS13190 (VNTUMSATTG_25780)	cytR	2864138..2865142 (-)	1005	WP_200767468.1	LacI family DNA-binding transcriptional regulator	Regulator
VNTUMSATTG_RS13195 (VNTUMSATTG_25790)	-	2865281..2866408 (-)	1128	WP_200765874.1	Gfo/Idh/MocA family protein	-
VNTUMSATTG_RS13200 (VNTUMSATTG_25800)	-	2866444..2867223 (-)	780	WP_200765875.1	ATP-binding cassette domain-containing protein	-
VNTUMSATTG_RS13205 (VNTUMSATTG_25810)	-	2867223..2868203 (-)	981	WP_022550011.1	ABC transporter permease	-
VNTUMSATTG_RS13210 (VNTUMSATTG_25820)	-	2868276..2869265 (-)	990	WP_200765876.1	substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36171.70 Da
• Isoelectric Point: 7.2224

>NTDB_id=83385 VNTUMSATTG_RS13190 WP_200767468.1 2864138..2865142(-) (cytR) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MPTVKDVARVAGCSTATVSRALTNPDMVSEKTRKKVLHAVDVTGYSLNVAARSLRRSITNTIVVVVPDISNPYFSQVISG
IEGIAHKAGKKVLLGDAGHEPERVQSYFDLLPTNQADGIILLTAEVSKRLLHGKTHGSGFPLVMACEYFQGMQLPTVSID
NQQAAEKAMAYLLSLGHKKFGVIQGPMSNPICIDRHQGYLSSLERAAIPSNPKWVLEGDFSFGSGYSLGRTLLSGADKPT
AIFCHNDEMAIGVMKVARELGIRVPEDLSVMGFDDIPFAEYCEPGLTTIHQPRAEIGEAAMKLLMDLIEGKEAVGHYYLN
ANLIVRNSTAVAKF

Nucleotide

• Length: 1005 bp

>NTDB_id=83385 VNTUMSATTG_RS13190 WP_200767468.1 2864138..2865142(-) (cytR) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATACCAACAGTAAAAGATGTTGCCAGAGTTGCGGGTTGTTCAACCGCAACGGTCTCACGTGCTTTGACCAATCCAGATAT
GGTTTCTGAAAAAACACGCAAAAAAGTGCTGCATGCCGTTGATGTAACAGGGTATTCCCTTAACGTCGCAGCGCGCTCTT
TGCGGCGAAGTATCACTAACACCATTGTGGTGGTGGTGCCTGACATATCCAACCCTTACTTCTCTCAGGTGATTTCCGGC
ATTGAAGGCATAGCCCACAAGGCGGGTAAAAAGGTGCTGTTGGGGGATGCTGGTCACGAACCTGAACGAGTGCAATCCTA
TTTTGACTTGCTTCCGACCAATCAGGCTGACGGCATTATTCTTTTGACCGCGGAAGTCTCTAAACGTCTGCTGCATGGCA
AAACGCACGGCAGCGGATTCCCGTTGGTCATGGCCTGTGAGTATTTCCAGGGAATGCAGTTGCCGACAGTGTCCATCGAC
AACCAACAAGCGGCTGAAAAAGCGATGGCCTATCTGTTGAGTCTGGGTCATAAGAAGTTTGGTGTGATTCAGGGACCTAT
GAGCAACCCGATATGCATTGATCGCCATCAGGGCTATCTCAGCTCTCTAGAACGGGCGGCAATACCTTCCAACCCCAAAT
GGGTGCTGGAAGGGGATTTCAGCTTTGGTTCGGGCTACTCTCTTGGCAGAACCTTGTTGAGTGGAGCGGATAAACCAACC
GCCATTTTTTGCCACAACGATGAAATGGCTATCGGAGTTATGAAAGTCGCGAGAGAGCTTGGTATCCGCGTTCCAGAAGA
CCTTTCTGTGATGGGGTTCGATGACATTCCATTTGCCGAATACTGTGAACCCGGACTGACGACCATTCATCAACCGAGAG
CAGAAATTGGAGAGGCAGCCATGAAGCTGTTGATGGATCTGATTGAAGGAAAGGAAGCGGTAGGGCATTACTACCTGAAT
GCGAATCTTATCGTTCGTAATTCTACCGCTGTTGCTAAATTCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (170-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	50.602	99.401	0.503
cytR	Vibrio parahaemolyticus RIMD 2210633	49.245	99.102	0.488