Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VNTUMSATTG_RS12360 Genome accession   NZ_AP024087
Coordinates   2691035..2692426 (-) Length   463 a.a.
NCBI ID   WP_022603175.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2686035..2697426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS12325 (VNTUMSATTG_24060) moaE 2686679..2687140 (-) 462 WP_004408162.1 molybdopterin synthase catalytic subunit MoaE -
  VNTUMSATTG_RS12330 (VNTUMSATTG_24070) moaD 2687144..2687389 (-) 246 WP_004408164.1 molybdopterin synthase sulfur carrier subunit -
  VNTUMSATTG_RS12335 (VNTUMSATTG_24080) moaC 2687389..2687865 (-) 477 WP_004408166.1 cyclic pyranopterin monophosphate synthase MoaC -
  VNTUMSATTG_RS12340 (VNTUMSATTG_24090) moaB 2687875..2688387 (-) 513 WP_004408168.1 molybdenum cofactor biosynthesis protein B -
  VNTUMSATTG_RS12345 (VNTUMSATTG_24100) moaA 2688464..2689456 (-) 993 WP_200765765.1 GTP 3',8-cyclase MoaA -
  VNTUMSATTG_RS12350 (VNTUMSATTG_24110) yvcK 2689781..2690668 (+) 888 WP_200765766.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  VNTUMSATTG_RS12355 (VNTUMSATTG_24120) - 2690657..2691004 (-) 348 WP_022550093.1 Hpt domain-containing protein -
  VNTUMSATTG_RS12360 (VNTUMSATTG_24130) luxO 2691035..2692426 (-) 1392 WP_022603175.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VNTUMSATTG_RS12365 (VNTUMSATTG_24140) uvrB 2692678..2694708 (-) 2031 WP_200765767.1 excinuclease ABC subunit UvrB -
  VNTUMSATTG_RS12375 (VNTUMSATTG_24150) rsxA 2695739..2696320 (+) 582 WP_022550090.1 electron transport complex subunit RsxA -
  VNTUMSATTG_RS12380 (VNTUMSATTG_24160) rsxB 2696320..2696898 (+) 579 WP_004408179.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51163.24 Da        Isoelectric Point: 4.9746

>NTDB_id=83384 VNTUMSATTG_RS12360 WP_022603175.1 2691035..2692426(-) (luxO) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MQDTTSNPNPKYLLMVEDTASVAALYRSYLSPLGLDITIVGTGKDAVESLEERTPDLILLDLRLPDMTGMDVLSSVKSNY
PDVPVIFMTAHGSIDTAVEAMRKGAQDFLIKPCEADRLRVTVNNAIRKAGKLRSPSSEPDNNYQGFIGSSQTMQAVYRTI
DSAAPSKASVFITGESGTGKEVCAEAIHAASKRGENPFIAINCAAIPKDLIESELFGHVKGAFTGASTDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRDR
GEDVVEIAYSLLGYMSHEEGKGFVRFSQQVVDKFIEYEWPGNVRQLQNVLRNAVVLNHGSEITLNMLPPPLNLPSVSDLK
QVNAYDAKSTKLSVEEIRPLWLTEKSAIEQAIEACEGNIPKAAGYLDVSPSTLYRKLQAWKEQ

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=83384 VNTUMSATTG_RS12360 WP_022603175.1 2691035..2692426(-) (luxO) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGCAAGACACAACTTCTAACCCCAATCCTAAATACCTATTGATGGTGGAGGATACCGCCTCAGTAGCAGCGCTCTATCG
ATCTTACCTCAGTCCACTGGGGCTGGACATTACTATTGTCGGAACAGGTAAAGATGCAGTTGAAAGCCTGGAAGAGCGAA
CACCAGACCTGATTCTTCTCGACTTACGCCTTCCTGATATGACGGGAATGGACGTTCTTTCTTCGGTGAAATCAAACTAC
CCCGATGTTCCTGTTATTTTTATGACCGCACACGGTTCGATTGATACCGCCGTTGAGGCAATGCGTAAGGGTGCTCAGGA
CTTTTTAATTAAGCCTTGTGAGGCAGACCGCCTGCGTGTAACGGTCAATAACGCCATTCGCAAAGCAGGGAAACTTCGTT
CTCCAAGCAGCGAACCCGATAACAACTACCAGGGCTTTATTGGCAGTAGCCAGACCATGCAGGCTGTTTACCGAACTATC
GACTCCGCGGCTCCCAGTAAAGCGTCAGTATTTATTACGGGCGAAAGTGGTACCGGTAAAGAAGTGTGTGCAGAAGCGAT
TCATGCCGCCAGTAAACGTGGTGAAAACCCGTTTATTGCCATCAACTGTGCTGCAATACCAAAAGACCTGATTGAAAGTG
AACTGTTTGGTCATGTGAAAGGGGCGTTTACCGGGGCATCAACCGACAGGCAGGGTGCCGCAGAGCTTGCAGACGGCGGT
ACGCTGTTTTTGGATGAGCTGTGTGAAATGGATCTGGACCTGCAAACCAAGCTACTTAGATTTATTCAAACGGGTACCTT
CCAAAAGGTTGGTTCTTCTAAAATGAAGAGTGTAGACGTACGCTTTGTGTGTGCGACTAACCGTGACCCCTGGAAAGAAG
TTCAGGAAGGGCGCTTCCGAGAAGATTTGTATTACCGTTTGTATGTCATTCCACTGCACCTTCCTCCTTTGCGAGACAGA
GGAGAAGATGTAGTAGAGATTGCTTATTCGTTGCTCGGTTACATGTCTCATGAAGAGGGTAAAGGGTTTGTTCGATTCTC
GCAGCAAGTCGTTGATAAATTTATTGAATACGAATGGCCGGGTAATGTTCGTCAGCTTCAGAATGTGCTTCGTAATGCCG
TAGTACTCAATCATGGTAGCGAGATCACATTAAACATGTTGCCACCGCCATTAAATTTGCCTTCTGTATCAGATTTGAAG
CAAGTAAATGCATATGACGCAAAATCAACTAAACTCTCAGTAGAAGAAATTCGACCACTGTGGCTTACCGAAAAAAGTGC
GATAGAACAAGCAATAGAGGCCTGTGAAGGAAATATTCCAAAGGCTGCGGGTTATTTAGATGTCAGCCCATCTACCTTGT
ATCGCAAGCTACAAGCTTGGAAAGAACAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(147-312)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

82.511

96.328

0.795
  pilR Pseudomonas aeruginosa PAK

39.286

96.76

0.38

Multiple sequence alignment