Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VNTUMSATTG_RS10080 Genome accession   NZ_AP024087
Coordinates   2182654..2184078 (+) Length   474 a.a.
NCBI ID   WP_200765503.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2177654..2189078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS10065 (VNTUMSATTG_19570) - 2179811..2180191 (-) 381 WP_004400064.1 hypothetical protein -
  VNTUMSATTG_RS10070 (VNTUMSATTG_19580) - 2180203..2181477 (-) 1275 WP_200765501.1 AarF/ABC1/UbiB kinase family protein -
  VNTUMSATTG_RS10075 (VNTUMSATTG_19590) - 2181483..2182196 (-) 714 WP_200765502.1 TetR family transcriptional regulator -
  VNTUMSATTG_RS10080 (VNTUMSATTG_19600) sbcB 2182654..2184078 (+) 1425 WP_200765503.1 exodeoxyribonuclease I Machinery gene
  VNTUMSATTG_RS10085 (VNTUMSATTG_19610) - 2184089..2184451 (+) 363 WP_200765504.1 CidA/LrgA family protein -
  VNTUMSATTG_RS10090 (VNTUMSATTG_19620) - 2184451..2185125 (+) 675 WP_200765505.1 LrgB family protein -
  VNTUMSATTG_RS10095 (VNTUMSATTG_19630) cdd 2185347..2186234 (+) 888 WP_200765506.1 cytidine deaminase -
  VNTUMSATTG_RS10100 (VNTUMSATTG_19640) purT 2186383..2187558 (+) 1176 WP_200765507.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  VNTUMSATTG_RS10105 (VNTUMSATTG_19650) - 2187608..2188249 (-) 642 WP_022592458.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54413.76 Da        Isoelectric Point: 5.1589

>NTDB_id=83380 VNTUMSATTG_RS10080 WP_200765503.1 2182654..2184078(+) (sbcB) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MSKENQPTLFFFDYETWGTSPAKDRPSQFAGVRTDMDLNIIGEPLVIYCQPPSDYLPSPEAALITGISPQTAVSKGLPEP
EFIKKIHDELSTPNTTSLGYNSIRFDDEVSRYTLYRNFYDPYAWSWQHGNSRWDLLDVMRACHALRPEGVNWPQRDDGHI
SFKLEHLSVANGIDHENAHDAMADVIATIEMAKKVKEAQPKLFDYLFSMRHKKKLNELVDIVNMTPLMHVSGMLGAECSY
TSWMVPVAWHPTNQNAVVMVNLAMDPSPLIELDSAQLKERLYTRRDQLSEGELPVPIKLVHLNKCPVLAPAKTLTAENAE
TIGIDREQCLKNLAIIRQHPEIREKLIELYQNQNEYDVDPDVDTQLYNGFFSPADKTAMEIIREKSPEQLAGLDLNVKDA
RIAPLLFRYRARHYPWTLDETEQAKWAAHCREYFESNLPEYMQNLENLVHEHDGDEKKIALLKSVYHYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=83380 VNTUMSATTG_RS10080 WP_200765503.1 2182654..2184078(+) (sbcB) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGTCAAAAGAAAACCAGCCGACTCTGTTCTTTTTCGATTACGAAACCTGGGGGACCAGCCCCGCTAAAGATCGACCTAG
CCAGTTTGCCGGAGTTCGCACAGACATGGATTTGAATATCATAGGTGAGCCTCTTGTCATTTATTGCCAGCCTCCCTCTG
ATTACCTCCCTTCACCTGAAGCCGCTCTGATTACCGGAATCTCACCACAAACAGCAGTGAGTAAAGGGCTACCCGAGCCT
GAGTTCATTAAAAAGATTCACGATGAACTCTCTACGCCAAACACCACAAGCCTTGGGTACAACAGTATTCGATTTGATGA
CGAAGTCTCTCGCTACACTCTTTATCGCAACTTTTACGACCCGTATGCCTGGAGCTGGCAGCACGGAAACTCTCGATGGG
ATTTGCTGGACGTAATGCGTGCCTGTCACGCACTTCGACCTGAGGGAGTGAACTGGCCTCAACGTGATGATGGTCATATA
AGCTTTAAGCTAGAGCACCTTTCTGTTGCCAATGGTATCGATCACGAAAATGCACACGATGCGATGGCAGATGTCATTGC
GACCATCGAAATGGCTAAGAAGGTTAAGGAAGCGCAGCCAAAGCTGTTCGATTACCTATTTAGTATGCGCCACAAAAAGA
AACTCAATGAGCTTGTCGATATCGTCAACATGACACCTTTGATGCATGTCTCCGGTATGTTGGGTGCAGAATGCTCCTAC
ACTTCGTGGATGGTTCCTGTCGCGTGGCACCCAACCAATCAAAATGCAGTCGTCATGGTCAATCTTGCCATGGACCCAAG
CCCGCTTATTGAGCTGGATTCCGCGCAGTTGAAAGAACGTCTCTATACAAGAAGAGATCAGCTTTCTGAAGGGGAACTTC
CAGTACCGATAAAACTCGTTCACCTGAACAAATGCCCTGTCCTCGCTCCTGCAAAAACGTTAACTGCGGAAAACGCAGAA
ACGATAGGTATTGATCGCGAGCAGTGCTTAAAAAACCTTGCCATAATTCGTCAACACCCTGAAATTAGGGAAAAGCTTAT
TGAGCTTTACCAGAATCAAAACGAGTATGACGTAGACCCAGATGTCGACACTCAGCTCTACAACGGATTCTTCTCTCCGG
CAGACAAGACAGCCATGGAGATCATTCGAGAGAAATCGCCTGAACAACTCGCAGGCTTGGATTTGAATGTAAAAGACGCA
CGAATCGCACCTCTGCTTTTCCGCTATCGTGCTCGCCACTACCCATGGACTTTGGACGAAACGGAACAAGCGAAATGGGC
AGCACATTGTCGTGAGTATTTTGAAAGCAACCTACCGGAATACATGCAGAATCTGGAAAACTTAGTTCACGAACATGACG
GTGACGAGAAAAAGATTGCCTTGCTAAAATCCGTATACCATTACGTTGAAAAATTGGTCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

75.476

99.789

0.753

Multiple sequence alignment