Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VNTUMSATTG_RS09775 Genome accession   NZ_AP024087
Coordinates   2106131..2107636 (+) Length   501 a.a.
NCBI ID   WP_200765462.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2101131..2112636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS09760 (VNTUMSATTG_18940) - 2101342..2102121 (+) 780 WP_004408138.1 chromosome partitioning ATPase -
  VNTUMSATTG_RS09765 (VNTUMSATTG_18950) - 2102118..2103653 (+) 1536 WP_200765460.1 SpoIIE family protein phosphatase -
  VNTUMSATTG_RS09770 (VNTUMSATTG_18960) - 2103663..2105936 (+) 2274 WP_200765461.1 response regulator -
  VNTUMSATTG_RS09775 (VNTUMSATTG_18970) luxO 2106131..2107636 (+) 1506 WP_200765462.1 sigma-54 dependent transcriptional regulator Regulator
  VNTUMSATTG_RS09780 (VNTUMSATTG_18980) - 2107620..2108633 (+) 1014 WP_200765463.1 glycosyltransferase family 4 protein -
  VNTUMSATTG_RS09785 (VNTUMSATTG_18990) - 2108817..2110034 (+) 1218 WP_200765464.1 glycosyltransferase family 4 protein -
  VNTUMSATTG_RS09790 (VNTUMSATTG_19000) - 2110031..2111152 (+) 1122 WP_200765465.1 glycosyltransferase -
  VNTUMSATTG_RS09795 (VNTUMSATTG_19010) - 2111622..2112365 (+) 744 WP_004408124.1 acyltransferase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 55876.09 Da        Isoelectric Point: 5.6891

>NTDB_id=83379 VNTUMSATTG_RS09775 WP_200765462.1 2106131..2107636(+) (luxO) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MTQPKVLLVEDSTSLAILYKQYVKDEPYDFFHVATGAEAKDFIEKNPPQLVILDLKLPDMHGQDVLAWIRENQISTSVII
ATAHGSVNVAVDLMRIGADDFLEKPINADRLKASIKNHLQRNKLEHLVEDLQSTLDRKRYQGFIGSSLPMQAVYKIIDSV
APTTASVFICGESGTGKEVCAEAIHNQSNRKNKPFIALNCGAIPRDLVESEIFGHMKGAFTGATTDRKGAASQANGGTLF
LDELCEMELDMQKKLLRFLQTGRFTPLGGTKEIQVDCRIICATNRDPLKEVQEGRFREDLYYRVHVVPINLPPLRERGTD
IIDIAKFFLRKYAREDKKKFTGFKRDAELVLCNYDWPGNVRQLQNIIRNIVVLNDEPQVSMEHLPPPLNTMSAGVGSASR
VIKAPVPKPEPVVVSIPEPVHAEAEVAVSAATTNFEAPPAPEPVEMGKMPVRPMAEIEREAIQNAIEYCDGNVLNAAVLL
ELSPSTLYRKKQAWETHEEED

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=83379 VNTUMSATTG_RS09775 WP_200765462.1 2106131..2107636(+) (luxO) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGACTCAACCTAAAGTTCTGCTAGTCGAAGACTCAACGTCACTGGCGATACTCTACAAACAGTACGTAAAAGATGAACC
GTACGATTTTTTCCACGTAGCGACGGGCGCAGAAGCTAAAGACTTTATTGAAAAGAATCCACCTCAGCTCGTGATACTGG
ATTTAAAACTGCCTGATATGCATGGTCAGGATGTGCTTGCCTGGATCCGGGAAAACCAAATATCCACATCTGTCATTATT
GCGACTGCTCACGGTTCAGTGAATGTCGCCGTCGATTTAATGCGAATCGGTGCTGACGATTTTCTTGAAAAACCCATCAA
TGCCGATCGACTCAAAGCCTCCATAAAAAACCATCTGCAGCGAAACAAGCTAGAGCACCTTGTTGAAGACTTGCAATCAA
CGCTGGACAGAAAGCGTTATCAGGGCTTTATCGGTTCCTCTCTGCCTATGCAGGCGGTATACAAGATTATTGATTCGGTT
GCTCCTACCACCGCCAGTGTCTTTATCTGTGGTGAGAGCGGTACTGGTAAAGAGGTATGTGCAGAAGCCATTCACAACCA
GAGCAATCGTAAAAACAAGCCTTTTATCGCCCTCAACTGCGGGGCGATTCCACGCGATTTGGTAGAAAGCGAAATCTTCG
GCCACATGAAAGGTGCGTTTACAGGTGCAACGACAGACAGAAAAGGGGCCGCTTCTCAGGCAAATGGCGGCACACTGTTT
CTGGATGAGTTGTGTGAGATGGAACTGGATATGCAGAAAAAGCTTCTTCGCTTTCTGCAAACCGGACGTTTCACTCCGCT
TGGTGGCACAAAAGAAATTCAGGTGGACTGCCGGATTATTTGTGCAACCAACCGGGACCCACTGAAAGAGGTTCAGGAAG
GTCGTTTTCGTGAAGACTTGTATTACCGTGTTCACGTCGTCCCTATTAACCTGCCTCCTCTCCGTGAACGCGGAACTGAC
ATTATCGACATAGCTAAATTCTTCCTTCGAAAATATGCCCGTGAAGATAAGAAGAAGTTTACCGGCTTTAAACGCGACGC
TGAGTTGGTTCTGTGTAACTACGACTGGCCGGGTAACGTACGTCAGTTGCAAAACATTATTCGCAATATCGTTGTACTTA
ACGATGAACCTCAAGTGTCAATGGAGCACCTACCGCCACCATTGAACACCATGTCGGCTGGTGTCGGCAGTGCTTCAAGA
GTTATTAAAGCACCGGTACCAAAACCTGAGCCAGTGGTTGTTTCCATTCCCGAGCCCGTACACGCTGAAGCGGAAGTCGC
AGTATCTGCGGCAACCACCAATTTTGAAGCCCCTCCCGCCCCAGAGCCTGTTGAAATGGGCAAGATGCCTGTCAGACCAA
TGGCAGAGATTGAGCGTGAGGCAATTCAAAACGCAATCGAATACTGCGATGGCAATGTACTGAATGCAGCTGTGCTTCTG
GAGCTTAGTCCATCCACTCTTTATCGTAAAAAACAGGCATGGGAAACCCATGAAGAAGAGGACTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(454-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.795

97.405

0.485

Multiple sequence alignment