Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QM974_RS00725 Genome accession   NZ_CP125966
Coordinates   153927..154670 (+) Length   247 a.a.
NCBI ID   WP_000660533.1    Uniprot ID   -
Organism   Helicobacter pylori strain H390r     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148927..159670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM974_RS00700 (QM974_00700) panD 151081..151437 (+) 357 WP_271330815.1 aspartate 1-decarboxylase -
  QM974_RS00705 (QM974_00705) - 151440..151733 (+) 294 WP_271330816.1 YbaB/EbfC family nucleoid-associated protein -
  QM974_RS00710 (QM974_00710) - 151733..152728 (+) 996 WP_271331139.1 PDZ domain-containing protein -
  QM974_RS00715 (QM974_00715) comB6 152734..153789 (+) 1056 WP_271330817.1 P-type conjugative transfer protein TrbL Machinery gene
  QM974_RS00720 (QM974_00720) comB7 153805..153930 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  QM974_RS00725 (QM974_00725) comB8 153927..154670 (+) 744 WP_000660533.1 virB8 family protein Machinery gene
  QM974_RS00730 (QM974_00730) comB9 154670..155632 (+) 963 WP_271330818.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QM974_RS00735 (QM974_00735) comB10 155625..156761 (+) 1137 WP_271330819.1 DNA type IV secretion system protein ComB10 Machinery gene
  QM974_RS00740 (QM974_00740) - 156831..158243 (+) 1413 WP_271330820.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QM974_RS00745 (QM974_00745) gmd 158258..159403 (+) 1146 WP_271330821.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28670.89 Da        Isoelectric Point: 8.9546

>NTDB_id=833732 QM974_RS00725 WP_000660533.1 153927..154670(+) (comB8) [Helicobacter pylori strain H390r]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=833732 QM974_RS00725 WP_000660533.1 153927..154670(+) (comB8) [Helicobacter pylori strain H390r]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGAAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968