Detailed information NTG0833733

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: QM974_RS00730
• Genome accession: NZ_CP125966
• Coordinates: 154670..155632 (+)
• Length: 320 a.a.
• NCBI ID: WP_271330818.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain H390r
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 149670..160632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QM974_RS00700 (QM974_00700)	panD	151081..151437 (+)	357	WP_271330815.1	aspartate 1-decarboxylase	-
QM974_RS00705 (QM974_00705)	-	151440..151733 (+)	294	WP_271330816.1	YbaB/EbfC family nucleoid-associated protein	-
QM974_RS00710 (QM974_00710)	-	151733..152728 (+)	996	WP_271331139.1	PDZ domain-containing protein	-
QM974_RS00715 (QM974_00715)	comB6	152734..153789 (+)	1056	WP_271330817.1	P-type conjugative transfer protein TrbL	Machinery gene
QM974_RS00720 (QM974_00720)	comB7	153805..153930 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
QM974_RS00725 (QM974_00725)	comB8	153927..154670 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
QM974_RS00730 (QM974_00730)	comB9	154670..155632 (+)	963	WP_271330818.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QM974_RS00735 (QM974_00735)	comB10	155625..156761 (+)	1137	WP_271330819.1	DNA type IV secretion system protein ComB10	Machinery gene
QM974_RS00740 (QM974_00740)	-	156831..158243 (+)	1413	WP_271330820.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QM974_RS00745 (QM974_00745)	gmd	158258..159403 (+)	1146	WP_271330821.1	GDP-mannose 4,6-dehydratase	-
QM974_RS00750 (QM974_00750)	-	159396..160328 (+)	933	WP_271330822.1	GDP-L-fucose synthase	-
QM974_RS00755 (QM974_00755)	-	160399..160554 (-)	156	WP_271330823.1	hypothetical protein	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36835.45 Da
• Isoelectric Point: 9.3756

>NTDB_id=833733 QM974_RS00730 WP_271330818.1 154670..155632(+) (comB9) [Helicobacter pylori strain H390r]
MRKVLCTLVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=833733 QM974_RS00730 WP_271330818.1 154670..155632(+) (comB9) [Helicobacter pylori strain H390r]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGATAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTGGGCAAGGACTATTTGTGTATCCGTTTCGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938