Detailed information NTG0833730

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QM974_RS00715
• Genome accession: NZ_CP125966
• Coordinates: 152734..153789 (+)
• Length: 351 a.a.
• NCBI ID: WP_271330817.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain H390r
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147734..158789

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QM974_RS00685 (QM974_00685)	-	148161..148574 (+)	414	WP_001023005.1	universal stress protein	-
QM974_RS00690 (QM974_00690)	-	148594..148869 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
QM974_RS00695 (QM974_00695)	-	148869..151091 (+)	2223	WP_271330814.1	ATP-dependent Clp protease ATP-binding subunit	-
QM974_RS00700 (QM974_00700)	panD	151081..151437 (+)	357	WP_271330815.1	aspartate 1-decarboxylase	-
QM974_RS00705 (QM974_00705)	-	151440..151733 (+)	294	WP_271330816.1	YbaB/EbfC family nucleoid-associated protein	-
QM974_RS00710 (QM974_00710)	-	151733..152728 (+)	996	WP_271331139.1	PDZ domain-containing protein	-
QM974_RS00715 (QM974_00715)	comB6	152734..153789 (+)	1056	WP_271330817.1	P-type conjugative transfer protein TrbL	Machinery gene
QM974_RS00720 (QM974_00720)	comB7	153805..153930 (+)	126	WP_001217874.1	hypothetical protein	Machinery gene
QM974_RS00725 (QM974_00725)	comB8	153927..154670 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
QM974_RS00730 (QM974_00730)	comB9	154670..155632 (+)	963	WP_271330818.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QM974_RS00735 (QM974_00735)	comB10	155625..156761 (+)	1137	WP_271330819.1	DNA type IV secretion system protein ComB10	Machinery gene
QM974_RS00740 (QM974_00740)	-	156831..158243 (+)	1413	WP_271330820.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39917.90 Da
• Isoelectric Point: 8.8165

>NTDB_id=833730 QM974_RS00715 WP_271330817.1 152734..153789(+) (comB6) [Helicobacter pylori strain H390r]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHIQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPVSSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=833730 QM974_RS00715 WP_271330817.1 152734..153789(+) (comB6) [Helicobacter pylori strain H390r]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGTGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATACAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAGCTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGTTTCTTCCCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAGAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.726	100	0.957