Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | QM974_RS00295 | Genome accession | NZ_CP125966 |
| Coordinates | 64344..64919 (+) | Length | 191 a.a. |
| NCBI ID | WP_271330774.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain H390r | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 59344..69919
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QM974_RS00270 (QM974_00270) | uvrD | 60035..62080 (+) | 2046 | WP_271330770.1 | DNA helicase UvrD | - |
| QM974_RS00275 (QM974_00275) | flgA | 62077..62733 (+) | 657 | WP_271330771.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| QM974_RS00280 (QM974_00280) | - | 62743..63306 (+) | 564 | WP_271330772.1 | UbiX family flavin prenyltransferase | - |
| QM974_RS00285 (QM974_00285) | coaD | 63306..63779 (+) | 474 | WP_154427843.1 | pantetheine-phosphate adenylyltransferase | - |
| QM974_RS00290 (QM974_00290) | tmk | 63781..64356 (+) | 576 | WP_271330773.1 | dTMP kinase | - |
| QM974_RS00295 (QM974_00295) | comFC | 64344..64919 (+) | 576 | WP_271330774.1 | ComF family protein | Machinery gene |
| QM974_RS00300 (QM974_00300) | - | 64952..66991 (+) | 2040 | WP_271330775.1 | N-6 DNA methylase | - |
| QM974_RS07590 | - | 66988..67623 (+) | 636 | WP_333781769.1 | restriction endonuclease subunit S | - |
| QM974_RS07595 | - | 67650..68192 (+) | 543 | WP_231212853.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21379.01 Da Isoelectric Point: 9.0940
>NTDB_id=833729 QM974_RS00295 WP_271330774.1 64344..64919(+) (comFC) [Helicobacter pylori strain H390r]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRTNNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKILNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNTISYAGKSLEFRTNNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKYLKILNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=833729 QM974_RS00295 WP_271330774.1 64344..64919(+) (comFC) [Helicobacter pylori strain H390r]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGTTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAATCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGTTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATACTATTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAATCCTAAACATTAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |