Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QM337_RS06235 Genome accession   NZ_CP125903
Coordinates   1277276..1278148 (+) Length   290 a.a.
NCBI ID   WP_283532324.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1272276..1283148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM337_RS06215 (QM337_06215) sucC 1272391..1273557 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  QM337_RS06220 (QM337_06220) sucD 1273579..1274487 (+) 909 WP_000110252.1 succinate--CoA ligase subunit alpha -
  QM337_RS06225 (QM337_06225) - 1274714..1275832 (+) 1119 WP_001041658.1 LysM peptidoglycan-binding domain-containing protein -
  QM337_RS06230 (QM337_06230) fmhC 1275860..1277104 (+) 1245 WP_000672864.1 FemA/FemB family glycyltransferase FmhC -
  QM337_RS06235 (QM337_06235) dprA 1277276..1278148 (+) 873 WP_283532324.1 DNA-processing protein DprA Machinery gene
  QM337_RS06240 (QM337_06240) topA 1278322..1280397 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  QM337_RS06245 (QM337_06245) trmFO 1280553..1281860 (+) 1308 WP_000195263.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33533.94 Da        Isoelectric Point: 9.5241

>NTDB_id=833593 QM337_RS06235 WP_283532324.1 1277276..1278148(+) (dprA) [Staphylococcus aureus strain CHAL1]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIVKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYRGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEIGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=833593 QM337_RS06235 WP_283532324.1 1277276..1278148(+) (dprA) [Staphylococcus aureus strain CHAL1]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATACCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTGTTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAGAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGCACATTAGC
ATTAAGAAATAAAATAGAAGAAATAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

97.931

100

0.979
  dprA Staphylococcus aureus N315

97.586

100

0.976