Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QM337_RS04620 Genome accession   NZ_CP125903
Coordinates   965957..966943 (+) Length   328 a.a.
NCBI ID   WP_123875251.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 960957..971943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM337_RS04600 (QM337_04600) - 961394..963040 (+) 1647 WP_283532198.1 IS1182-like element ISSau3 family transposase -
  QM337_RS04605 (QM337_04605) trpS 963067..964056 (-) 990 WP_000448933.1 tryptophan--tRNA ligase -
  QM337_RS04610 (QM337_04610) spxA 964351..964746 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  QM337_RS04615 (QM337_04615) mecA 965117..965836 (+) 720 WP_001217728.1 adaptor protein MecA -
  QM337_RS04620 (QM337_04620) coiA 965957..966943 (+) 987 WP_123875251.1 competence protein CoiA family protein Machinery gene
  QM337_RS04625 (QM337_04625) pepF 966991..968799 (+) 1809 WP_000082722.1 oligoendopeptidase F -
  QM337_RS04630 (QM337_04630) yjbH 969259..970065 (-) 807 WP_000896691.1 protease adaptor protein YjbH -
  QM337_RS04635 (QM337_04635) - 970088..970453 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  QM337_RS04640 (QM337_04640) - 970557..971150 (-) 594 WP_000224620.1 CYTH domain-containing protein -
  QM337_RS04645 (QM337_04645) - 971336..971683 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38726.29 Da        Isoelectric Point: 9.5827

>NTDB_id=833590 QM337_RS04620 WP_123875251.1 965957..966943(+) (coiA) [Staphylococcus aureus strain CHAL1]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIIMFQQIQYLGGHKYVAEKKNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDHEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSILVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=833590 QM337_RS04620 WP_123875251.1 965957..966943(+) (coiA) [Staphylococcus aureus strain CHAL1]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATTATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAAGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCACGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCATATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.646

100

0.966
  coiA Staphylococcus aureus MW2

96.646

100

0.966