Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QM339_RS02540 Genome accession   NZ_CP125899
Coordinates   536506..537075 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 531506..542075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM339_RS02515 (QM339_02515) cysE 532719..533366 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  QM339_RS02520 (QM339_02520) cysS 533350..534750 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  QM339_RS02525 (QM339_02525) - 534743..535147 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  QM339_RS02530 (QM339_02530) rlmB 535155..535901 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QM339_RS02535 (QM339_02535) - 535901..536425 (+) 525 WP_000664731.1 NYN domain-containing protein -
  QM339_RS02540 (QM339_02540) sigH 536506..537075 (+) 570 WP_000872878.1 RNA polymerase sigma factor Regulator
  QM339_RS02545 (QM339_02545) rpmG 537190..537333 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  QM339_RS02550 (QM339_02550) secE 537389..537571 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QM339_RS02555 (QM339_02555) nusG 537584..538132 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QM339_RS02560 (QM339_02560) rplK 538313..538735 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  QM339_RS02565 (QM339_02565) rplA 538943..539635 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  QM339_RS02570 (QM339_02570) rplJ 539907..540407 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  QM339_RS02575 (QM339_02575) rplL 540450..540818 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QM339_RS02580 (QM339_02580) - 540993..541601 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=833500 QM339_RS02540 WP_000872878.1 536506..537075(+) (sigH) [Staphylococcus aureus strain CHAL3]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=833500 QM339_RS02540 WP_000872878.1 536506..537075(+) (sigH) [Staphylococcus aureus strain CHAL3]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979