Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QM342_RS04470 Genome accession   NZ_CP125895
Coordinates   931160..932146 (+) Length   328 a.a.
NCBI ID   WP_000959285.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 926160..937146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM342_RS04445 (QM342_04445) opp4B 926373..927335 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  QM342_RS04450 (QM342_04450) opp4C 927347..928228 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  QM342_RS04455 (QM342_04455) trpS 928270..929259 (-) 990 WP_283484650.1 tryptophan--tRNA ligase -
  QM342_RS04460 (QM342_04460) spxA 929554..929949 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  QM342_RS04465 (QM342_04465) mecA 930320..931039 (+) 720 WP_001217728.1 adaptor protein MecA -
  QM342_RS04470 (QM342_04470) coiA 931160..932146 (+) 987 WP_000959285.1 competence protein CoiA family protein Machinery gene
  QM342_RS04475 (QM342_04475) pepF 932194..934002 (+) 1809 WP_000082731.1 oligoendopeptidase F -
  QM342_RS04480 (QM342_04480) yjbH 934462..935268 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  QM342_RS04485 (QM342_04485) - 935291..935656 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  QM342_RS04490 (QM342_04490) - 935760..936353 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  QM342_RS04495 (QM342_04495) - 936539..936886 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38811.37 Da        Isoelectric Point: 9.5840

>NTDB_id=833422 QM342_RS04470 WP_000959285.1 931160..932146(+) (coiA) [Staphylococcus aureus strain CHAL5]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQTMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=833422 QM342_RS04470 WP_000959285.1 931160..932146(+) (coiA) [Staphylococcus aureus strain CHAL5]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAACAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.171

100

0.982
  coiA Staphylococcus aureus N315

98.171

100

0.982