Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QMY49_RS16300 Genome accession   NZ_CP125875
Coordinates   3445563..3446156 (+) Length   197 a.a.
NCBI ID   WP_005451500.1    Uniprot ID   A0A9X3S2A2
Organism   Vibrio harveyi strain SB1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3440563..3451156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY49_RS16285 (QMY49_16285) - 3441246..3443816 (-) 2571 WP_283312350.1 PBP1A family penicillin-binding protein -
  QMY49_RS16290 (QMY49_16290) pilM 3443995..3445011 (+) 1017 WP_026138410.1 type IV pilus assembly protein PilM Machinery gene
  QMY49_RS16295 (QMY49_16295) pilN 3444995..3445570 (+) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  QMY49_RS16300 (QMY49_16300) pilO 3445563..3446156 (+) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  QMY49_RS16305 (QMY49_16305) pilP 3446146..3446661 (+) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  QMY49_RS16310 (QMY49_16310) pilQ 3446696..3448447 (+) 1752 WP_005451505.1 type IV pilus secretin PilQ family protein Machinery gene
  QMY49_RS16315 (QMY49_16315) aroK 3448637..3449155 (+) 519 WP_005451507.1 shikimate kinase AroK -
  QMY49_RS16320 (QMY49_16320) aroB 3449187..3450287 (+) 1101 WP_009697563.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23020.58 Da        Isoelectric Point: 4.8068

>NTDB_id=833255 QMY49_RS16300 WP_005451500.1 3445563..3446156(+) (pilO) [Vibrio harveyi strain SB1]
MVNWQDLEMDEIAEWPLVPQIVVILLLVVLIQGLGYWFYLKPEQEQLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKQSEHFLYRLPLDIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEVKKDEK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=833255 QMY49_RS16300 WP_005451500.1 3445563..3446156(+) (pilO) [Vibrio harveyi strain SB1]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATCGCTGAGTGGCCATTGGTGCCTCAGATAGTAGTGATCTTGTTGTT
AGTTGTGCTGATTCAAGGCCTTGGTTATTGGTTTTATTTAAAGCCAGAGCAAGAACAGCTGAATAACCTTATTCAAGAAG
AACAAACCTTAAAAGTTGCGTTACGGATCAAAGCGAACAAAGTCGCTGCTTTGCCTCAATTGCAATCGCAACTTGATGAG
CTTACTACTCGATACGAATTGCTACTGCAACAACTGCCTGCACAGAAAGAGCTGGCAACCATGTTGGCTTCGGTGAATGA
ACTCGGAATTGATAATAAGTTGACGTTCACCCGAATCGACTGGGGTGATAAGCAATCAGAACACTTCCTTTATCGTTTAC
CGCTCGACATTGAGTTGACAGGGGATTTTCATGATATCGGTCGTTTCTCCCAAGCGATTGCGACGTTGCCACGCATCATC
ACTTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTCTGCACTTTCGTGTGAAAGCAAACACTTACCA
GTTCAAACCAGAGGTGAAGAAAGATGAGAAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

93.158

96.447

0.898
  pilO Vibrio cholerae strain A1552

71.066

100

0.711