Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QM318_RS02180 Genome accession   NZ_CP125867
Coordinates   407724..408410 (+) Length   228 a.a.
NCBI ID   WP_342626465.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 19-02247     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402724..413410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM318_RS02145 (QM318_02145) yqeH 403251..404351 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  QM318_RS02150 (QM318_02150) aroE 404365..405171 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  QM318_RS02155 (QM318_02155) yhbY 405175..405465 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  QM318_RS02160 (QM318_02160) nadD 405468..406037 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QM318_RS02165 (QM318_02165) yqeK 406027..406611 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QM318_RS02170 (QM318_02170) rsfS 406612..406965 (+) 354 WP_001088022.1 ribosome silencing factor -
  QM318_RS02175 (QM318_02175) - 406968..407684 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  QM318_RS02180 (QM318_02180) comEA 407724..408410 (+) 687 WP_342626465.1 ComEA family DNA-binding protein Machinery gene
  QM318_RS02185 (QM318_02185) - 408502..408963 (+) 462 WP_000439693.1 ComE operon protein 2 -
  QM318_RS02190 (QM318_02190) comEC 408968..411169 (+) 2202 WP_001548978.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QM318_RS02195 (QM318_02195) holA 411226..412200 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  QM318_RS02200 (QM318_02200) rpsT 412245..412496 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25877.52 Da        Isoelectric Point: 9.3305

>NTDB_id=833179 QM318_RS02180 WP_342626465.1 407724..408410(+) (comEA) [Staphylococcus aureus strain 19-02247]
MLLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=833179 QM318_RS02180 WP_342626465.1 407724..408410(+) (comEA) [Staphylococcus aureus strain 19-02247]
GTGCTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

96.916

99.561

0.965