Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QM319_RS05950 Genome accession   NZ_CP125863
Coordinates   1233956..1234828 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 19-00012     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1228956..1239828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM319_RS05920 (QM319_05915) - 1229103..1229870 (+) 768 WP_000176395.1 ribonuclease HII -
  QM319_RS05925 (QM319_05920) sucC 1229979..1231145 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  QM319_RS05930 (QM319_05925) sucD 1231167..1232075 (+) 909 WP_031775869.1 succinate--CoA ligase subunit alpha -
  QM319_RS05935 (QM319_05930) - 1232302..1232357 (+) 56 Protein_1159 YSIRK-type signal peptide-containing protein -
  QM319_RS05940 (QM319_05935) - 1232362..1232514 (+) 153 Protein_1160 cell wall hydrolase -
  QM319_RS05945 (QM319_05940) fmhC 1232542..1233785 (+) 1244 Protein_1161 FemA/FemB family glycyltransferase FmhC -
  QM319_RS05950 (QM319_05945) dprA 1233956..1234828 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  QM319_RS05955 (QM319_05950) topA 1235002..1237077 (+) 2076 WP_001807811.1 type I DNA topoisomerase -
  QM319_RS05960 (QM319_05955) trmFO 1237233..1238540 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=833141 QM319_RS05950 WP_000620182.1 1233956..1234828(+) (dprA) [Staphylococcus aureus strain 19-00012]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=833141 QM319_RS05950 WP_000620182.1 1233956..1234828(+) (dprA) [Staphylococcus aureus strain 19-00012]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCTGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986