Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   U0N78_RS03730 Genome accession   NZ_CP140109
Coordinates   758910..759506 (+) Length   198 a.a.
NCBI ID   WP_012027296.1    Uniprot ID   A0A0H3N2W4
Organism   Streptococcus suis strain 2022WUSS148     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 753910..764506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0N78_RS03715 (U0N78_03715) vicX 754018..754821 (+) 804 WP_024378370.1 MBL fold metallo-hydrolase Regulator
  U0N78_RS03720 (U0N78_03720) vga(F) 755352..756737 (+) 1386 WP_032499500.1 ABC-F type ribosomal protection protein Vga(F) -
  U0N78_RS03725 (U0N78_03725) pbp2b 756829..758901 (+) 2073 WP_256769083.1 penicillin-binding protein PBP2B -
  U0N78_RS03730 (U0N78_03730) recR 758910..759506 (+) 597 WP_012027296.1 recombination mediator RecR Machinery gene
  U0N78_RS03735 (U0N78_03735) - 759611..760657 (+) 1047 WP_172045783.1 D-alanine--D-alanine ligase -
  U0N78_RS03740 (U0N78_03740) - 760759..761139 (+) 381 WP_044766415.1 OsmC family protein -
  U0N78_RS03745 (U0N78_03745) - 761141..762217 (+) 1077 WP_125177128.1 ABC transporter permease -
  U0N78_RS03750 (U0N78_03750) - 762227..762885 (+) 659 Protein_695 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.83 Da        Isoelectric Point: 4.4829

>NTDB_id=833138 U0N78_RS03730 WP_012027296.1 758910..759506(+) (recR) [Streptococcus suis strain 2022WUSS148]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=833138 U0N78_RS03730 WP_012027296.1 758910..759506(+) (recR) [Streptococcus suis strain 2022WUSS148]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACGGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAACCTGAAAACTCTGCTGACCCGCCTGATGGAAA
ATGAGGTGACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAAGCTACATCCATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49